HL_6HCJ_038

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

6HCJ|1|51|C|2462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_038 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.2252

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HCJ|1|51|C|2458
6HCJ|1|51|G|2459
6HCJ|1|51|A|2460
6HCJ|1|51|G|2461
6HCJ|1|51|C|2462
6HCJ|1|51|G|2463

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain N3

Ribosomal protein L15

Chain j3

Ribosomal protein L37