HL_6HCJ_040

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGUUCAGAUCCCC

Length

14 nucleotides

Bulged bases

6HCJ|1|51|U|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|G|2521
6HCJ|1|51|G|2522
6HCJ|1|51|G|2523
6HCJ|1|51|U|2524
6HCJ|1|51|U|2525
6HCJ|1|51|C|2526
6HCJ|1|51|A|2527
6HCJ|1|51|G|2528
6HCJ|1|51|A|2529
6HCJ|1|51|U|2530
6HCJ|1|51|C|2531
6HCJ|1|51|C|2532
6HCJ|1|51|C|2533
6HCJ|1|51|C|2534

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain X3

uL23

Chain g3

eL34

Chain k3

eL38