HL_6HCJ_041

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCGCGAGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_041 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1768

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6HCJ|1|51|G|2559
6HCJ|1|51|C|2560
6HCJ|1|51|C|2561
6HCJ|1|51|G|2562
6HCJ|1|51|C|2563
6HCJ|1|51|G|2564
6HCJ|1|51|A|2565
6HCJ|1|51|G|2566
6HCJ|1|51|G|2567
6HCJ|1|51|C|2568

Current chains

Chain 51

28S ribosomal RNA

Nearby chains