HL_6HCJ_045

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

6HCJ|1|51|C|2709, 6HCJ|1|51|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|2704
6HCJ|1|51|G|2705
6HCJ|1|51|G|2706
6HCJ|1|51|U|2707
6HCJ|1|51|U|2708
6HCJ|1|51|C|2709
6HCJ|1|51|C|2710
6HCJ|1|51|G|2711
6HCJ|1|51|G|2712

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain U3

eL22

Chain X3

uL23