HL_6HCJ_051

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

6HCJ|1|51|C|3670, 6HCJ|1|51|G|3671, 6HCJ|1|51|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_051 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.4115

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HCJ|1|51|C|3668
6HCJ|1|51|G|3669
6HCJ|1|51|C|3670
6HCJ|1|51|G|3671
6HCJ|1|51|G|3672
6HCJ|1|51|C|3673
6HCJ|1|51|G|3674

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain N3

Ribosomal protein L15