HL_6HCJ_053
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUCUAAUUAGU
- Length
- 11 nucleotides
- Bulged bases
- 6HCJ|1|51|U|3802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCJ_053 not in the Motif Atlas
- Geometric match to HL_7VTI_001
- Geometric discrepancy: 0.2845
- The information below is about HL_7VTI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48417.6
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
6HCJ|1|51|A|3795
6HCJ|1|51|U|3796
6HCJ|1|51|C|3797
6HCJ|1|51|U|3798
6HCJ|1|51|A|3799
6HCJ|1|51|A|3800
6HCJ|1|51|U|3801
6HCJ|1|51|U|3802
6HCJ|1|51|A|3803
6HCJ|1|51|G|3804
6HCJ|1|51|U|3805
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain V3
- Ribosomal protein L23
- Chain n3
- eL41
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