3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AUCUAAUUAGU
Length
11 nucleotides
Bulged bases
6HCJ|1|51|U|3802
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6HCJ_053 not in the Motif Atlas
Geometric match to HL_7VTI_001
Geometric discrepancy: 0.2845
The information below is about HL_7VTI_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_48417.6
Basepair signature
cWW-F-F
Number of instances in this motif group
22

Unit IDs

6HCJ|1|51|A|3795
6HCJ|1|51|U|3796
6HCJ|1|51|C|3797
6HCJ|1|51|U|3798
6HCJ|1|51|A|3799
6HCJ|1|51|A|3800
6HCJ|1|51|U|3801
6HCJ|1|51|U|3802
6HCJ|1|51|A|3803
6HCJ|1|51|G|3804
6HCJ|1|51|U|3805

Current chains

Chain 51
28S ribosomal RNA

Nearby chains

Chain A2
Small subunit ribosomal RNA; SSU rRNA
Chain V3
Ribosomal protein L23
Chain n3
eL41

Coloring options:


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