HL_6HCJ_059

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUCAAACGGUAACGCA

Length

17 nucleotides

Bulged bases

6HCJ|1|51|A|4214, 6HCJ|1|51|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|U|4208
6HCJ|1|51|G|4209
6HCJ|1|51|U|4210
6HCJ|1|51|C|4211
6HCJ|1|51|A|4212
6HCJ|1|51|A|4213
6HCJ|1|51|A|4214
6HCJ|1|51|C|4215
6HCJ|1|51|G|4216
6HCJ|1|51|G|4217
6HCJ|1|51|U|4218
6HCJ|1|51|A|4219
6HCJ|1|51|A|4220
6HCJ|1|51|C|4221
6HCJ|1|51|G|4222
6HCJ|1|51|C|4223
6HCJ|1|51|A|4224

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain I3

60S ribosomal protein L10

Chain T3

eL21

Chain b3

eL29