HL_6HCJ_063

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUGAAAGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|4319
6HCJ|1|51|G|4320
6HCJ|1|51|U|4321
6HCJ|1|51|G|4322
6HCJ|1|51|A|4323
6HCJ|1|51|A|4324
6HCJ|1|51|A|4325
6HCJ|1|51|G|4326
6HCJ|1|51|C|4327
6HCJ|1|51|G|4328

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain T3

eL21

Chain o3

eL42