HL_6HCJ_071

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6HCJ|1|51|G|4694, 6HCJ|1|51|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_071 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1897

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6HCJ|1|51|C|4688
6HCJ|1|51|U|4689
6HCJ|1|51|G|4690
6HCJ|1|51|A|4691
6HCJ|1|51|A|4692
6HCJ|1|51|C|4693
6HCJ|1|51|G|4694
6HCJ|1|51|C|4695
6HCJ|1|51|C|4696
6HCJ|1|51|U|4697
6HCJ|1|51|C|4698
6HCJ|1|51|U|4699
6HCJ|1|51|A|4700
6HCJ|1|51|A|4701
6HCJ|1|51|G|4702

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain H3

uL6

Chain O3

uL13

Chain m3

eL40