HL_6HCJ_074

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6HCJ|1|51|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_074 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.231

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6HCJ|1|51|G|4975
6HCJ|1|51|U|4976
6HCJ|1|51|A|4977
6HCJ|1|51|G|4978
6HCJ|1|51|A|4979
6HCJ|1|51|C|4980
6HCJ|1|51|G|4981
6HCJ|1|51|A|4982
6HCJ|1|51|C|4983

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain P3

uL22