HL_6HCJ_085

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_085 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3852

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6HCJ|1|A2|C|196
6HCJ|1|A2|U|197
6HCJ|1|A2|U|198
6HCJ|1|A2|C|199
6HCJ|1|A2|G|200
6HCJ|1|A2|C|201
6HCJ|1|A2|G|202
6HCJ|1|A2|G|203

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain J2

eS8