HL_6HCJ_086

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGUCAGGCGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|C|239
6HCJ|1|A2|G|240
6HCJ|1|A2|G|241
6HCJ|1|A2|U|242
6HCJ|1|A2|C|243
6HCJ|1|A2|A|244
6HCJ|1|A2|G|279
6HCJ|1|A2|G|280
6HCJ|1|A2|C|281
6HCJ|1|A2|G|282
6HCJ|1|A2|G|283

Current chains

Chain A2

18S ribosomal RNA

Nearby chains