HL_6HCJ_089

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUCGCCGUGCCU

Length

13 nucleotides

Bulged bases

6HCJ|1|A2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_089 not in the Motif Atlas

Geometric match to HL_6ZDU_001

Geometric discrepancy: 0.3824

The information below is about HL_6ZDU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99769.3

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6HCJ|1|A2|A|376
6HCJ|1|A2|G|377
6HCJ|1|A2|U|378
6HCJ|1|A2|C|379
6HCJ|1|A2|G|380
6HCJ|1|A2|C|381
6HCJ|1|A2|C|382
6HCJ|1|A2|G|383
6HCJ|1|A2|U|384
6HCJ|1|A2|G|385
6HCJ|1|A2|C|386
6HCJ|1|A2|C|387
6HCJ|1|A2|U|388

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain J2

eS8

Chain M2

Ribosomal protein S11