3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CCAAGG
Length
6 nucleotides
Bulged bases
6HCJ|1|A2|A|464
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6HCJ_092 not in the Motif Atlas
Homologous match to HL_4V88_196
Geometric discrepancy: 0.3056
The information below is about HL_4V88_196
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

6HCJ|1|A2|C|462
6HCJ|1|A2|C|463
6HCJ|1|A2|A|464
6HCJ|1|A2|A|465
6HCJ|1|A2|G|466
6HCJ|1|A2|G|467

Current chains

Chain A2
18S ribosomal RNA

Nearby chains

Chain H2
40S ribosomal protein S6
Chain V3
Ribosomal protein L23

Coloring options:


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