HL_6HCJ_094

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUUUCGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_094 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3687

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6HCJ|1|A2|U|538
6HCJ|1|A2|C|539
6HCJ|1|A2|U|540
6HCJ|1|A2|U|541
6HCJ|1|A2|U|542
6HCJ|1|A2|C|543
6HCJ|1|A2|G|544
6HCJ|1|A2|A|545

Current chains

Chain A2

18S ribosomal RNA

Nearby chains