HL_6HCJ_097

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAAAAUUAGAGUGUUCAAAGCAGGCCGCCUGGAUACCGCAGC

Length

44 nucleotides

Bulged bases

6HCJ|1|A2|G|821

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|G|807
6HCJ|1|A2|A|808
6HCJ|1|A2|A|809
6HCJ|1|A2|A|810
6HCJ|1|A2|A|811
6HCJ|1|A2|A|812
6HCJ|1|A2|A|813
6HCJ|1|A2|U|814
6HCJ|1|A2|U|815
6HCJ|1|A2|A|816
6HCJ|1|A2|G|817
6HCJ|1|A2|A|818
6HCJ|1|A2|G|819
6HCJ|1|A2|U|820
6HCJ|1|A2|G|821
6HCJ|1|A2|U|822
6HCJ|1|A2|U|823
6HCJ|1|A2|C|824
6HCJ|1|A2|A|825
6HCJ|1|A2|A|826
6HCJ|1|A2|A|827
6HCJ|1|A2|G|828
6HCJ|1|A2|C|829
6HCJ|1|A2|A|830
6HCJ|1|A2|G|831
6HCJ|1|A2|G|832
6HCJ|1|A2|C|833
6HCJ|1|A2|C|834
6HCJ|1|A2|G|841
6HCJ|1|A2|C|842
6HCJ|1|A2|C|843
6HCJ|1|A2|U|844
6HCJ|1|A2|G|845
6HCJ|1|A2|G|846
6HCJ|1|A2|A|847
6HCJ|1|A2|U|848
6HCJ|1|A2|A|849
6HCJ|1|A2|C|850
6HCJ|1|A2|C|851
6HCJ|1|A2|G|852
6HCJ|1|A2|C|853
6HCJ|1|A2|A|854
6HCJ|1|A2|G|855
6HCJ|1|A2|C|856

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain K2

Ribosomal protein S9 (Predicted)

Chain M2

Ribosomal protein S11

Chain X2

Ribosomal protein S15a

Chain Z2

eS24