HL_6HCJ_105
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6HCJ|1|A2|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCJ_105 not in the Motif Atlas
- Geometric match to HL_5J7L_143
- Geometric discrepancy: 0.1643
- The information below is about HL_5J7L_143
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
6HCJ|1|A2|G|1245
6HCJ|1|A2|A|1246
6HCJ|1|A2|C|1247
6HCJ|1|A2|U|1248
6HCJ|1|A2|C|1249
6HCJ|1|A2|A|1250
6HCJ|1|A2|A|1251
6HCJ|1|A2|C|1252
6HCJ|1|A2|A|1253
6HCJ|1|A2|C|1254
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain 33
- Transfer RNA; tRNA
- Chain R2
- Ribosomal protein S16
- Chain V2
- uS10
- Chain e2
- uS14
- Chain q3
- Transfer RNA; tRNA
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