HL_6HCJ_110

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_110 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.36

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6HCJ|1|A2|C|1460
6HCJ|1|A2|G|1461
6HCJ|1|A2|U|1462
6HCJ|1|A2|U|1463
6HCJ|1|A2|C|1464
6HCJ|1|A2|A|1465
6HCJ|1|A2|G|1466

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain S2

eS17

Chain h2

RACK1