HL_6HCJ_123
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGUGUGAGGCC
- Length
- 11 nucleotides
- Bulged bases
- 6HCJ|1|51|G|232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCJ_123 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2957
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05426.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6HCJ|1|51|G|229
6HCJ|1|51|G|230
6HCJ|1|51|U|231
6HCJ|1|51|G|232
6HCJ|1|51|U|233
6HCJ|1|51|G|234
6HCJ|1|51|A|235
6HCJ|1|51|G|236
6HCJ|1|51|G|237
6HCJ|1|51|C|238
6HCJ|1|51|C|239
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 81
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C3
- uL4
- Chain Y3
- Ribosomal protein L26
Coloring options: