HL_6HCJ_131

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGGAUGAACCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|1884
6HCJ|1|51|G|1885
6HCJ|1|51|G|1886
6HCJ|1|51|G|1887
6HCJ|1|51|A|1888
6HCJ|1|51|U|1889
6HCJ|1|51|G|1890
6HCJ|1|51|A|1891
6HCJ|1|51|A|1892
6HCJ|1|51|C|1893
6HCJ|1|51|C|1894
6HCJ|1|51|G|1895

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 71

5S ribosomal RNA; 5S rRNA

Chain F3

uL30

Chain e3

eL32

Chain f3

eL33