HL_6HCJ_132

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUUCUCUUUU

Length

11 nucleotides

Bulged bases

6HCJ|1|51|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_132 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.3699

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6HCJ|1|51|A|2623
6HCJ|1|51|G|2624
6HCJ|1|51|U|2625
6HCJ|1|51|U|2626
6HCJ|1|51|C|2627
6HCJ|1|51|U|2628
6HCJ|1|51|C|2629
6HCJ|1|51|U|2630
6HCJ|1|51|U|2631
6HCJ|1|51|U|2632
6HCJ|1|51|U|2633

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain U3

eL22