3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CCAAGGGAACGGGCUUGG
Length
18 nucleotides
Bulged bases
6HCJ|1|51|A|3876, 6HCJ|1|51|A|3877, 6HCJ|1|51|C|3878
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCJ|1|51|C|3869
6HCJ|1|51|C|3870
6HCJ|1|51|A|3871
6HCJ|1|51|A|3872
6HCJ|1|51|G|3873
6HCJ|1|51|G|3874
6HCJ|1|51|G|3875
6HCJ|1|51|A|3876
6HCJ|1|51|A|3877
6HCJ|1|51|C|3878
6HCJ|1|51|G|3879
6HCJ|1|51|G|3880
6HCJ|1|51|G|3881
6HCJ|1|51|C|3882
6HCJ|1|51|U|3883
6HCJ|1|51|U|3884
6HCJ|1|51|G|3885
6HCJ|1|51|G|3886

Current chains

Chain 51
28S ribosomal RNA

Nearby chains

Chain B3
uL3
Chain O3
uL13
Chain e3
eL32
Chain f3
eL33

Coloring options:

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