HL_6HCJ_138

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGACCUUUUGGGUUUUAAGCAG

Length

23 nucleotides

Bulged bases

6HCJ|1|51|C|4349, 6HCJ|1|51|U|4354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|4345
6HCJ|1|51|U|4346
6HCJ|1|51|G|4347
6HCJ|1|51|A|4348
6HCJ|1|51|C|4349
6HCJ|1|51|C|4350
6HCJ|1|51|U|4351
6HCJ|1|51|U|4352
6HCJ|1|51|U|4353
6HCJ|1|51|U|4354
6HCJ|1|51|G|4355
6HCJ|1|51|G|4356
6HCJ|1|51|G|4357
6HCJ|1|51|U|4358
6HCJ|1|51|U|4359
6HCJ|1|51|U|4360
6HCJ|1|51|U|4361
6HCJ|1|51|A|4362
6HCJ|1|51|A|4363
6HCJ|1|51|G|4364
6HCJ|1|51|C|4365
6HCJ|1|51|A|4366
6HCJ|1|51|G|4367

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain Q3

eL18

Chain a3

uL15

Chain i3

60S ribosomal protein L36

Chain o3

eL42