HL_6HCJ_142
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUAGCUGCGAGAAUUAAUGUGAAUUG
- Length
- 26 nucleotides
- Bulged bases
- 6HCJ|1|81|U|51, 6HCJ|1|81|G|58, 6HCJ|1|81|A|71
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|81|C|50
6HCJ|1|81|U|51
6HCJ|1|81|A|52
6HCJ|1|81|G|53
6HCJ|1|81|C|54
6HCJ|1|81|U|55
6HCJ|1|81|G|56
6HCJ|1|81|C|57
6HCJ|1|81|G|58
6HCJ|1|81|A|59
6HCJ|1|81|G|60
6HCJ|1|81|A|61
6HCJ|1|81|A|62
6HCJ|1|81|U|63
6HCJ|1|81|U|64
6HCJ|1|81|A|65
6HCJ|1|81|A|66
6HCJ|1|81|U|67
6HCJ|1|81|G|68
6HCJ|1|81|U|69
6HCJ|1|81|G|70
6HCJ|1|81|A|71
6HCJ|1|81|A|72
6HCJ|1|81|U|73
6HCJ|1|81|U|74
6HCJ|1|81|G|75
Current chains
- Chain 81
- 5.8S ribosomal RNA
Nearby chains
- Chain 51
- Large subunit ribosomal RNA; LSU rRNA
- Chain X3
- uL23
- Chain Y3
- Ribosomal protein L26
- Chain h3
- uL29
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
Coloring options: