HL_6HCJ_149

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUCCACUUUAAAUCCUUUAACGAGGAUC

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|G|563
6HCJ|1|A2|A|564
6HCJ|1|A2|G|565
6HCJ|1|A2|U|566
6HCJ|1|A2|C|567
6HCJ|1|A2|C|568
6HCJ|1|A2|A|569
6HCJ|1|A2|C|570
6HCJ|1|A2|U|571
6HCJ|1|A2|U|572
6HCJ|1|A2|U|573
6HCJ|1|A2|A|574
6HCJ|1|A2|A|575
6HCJ|1|A2|A|576
6HCJ|1|A2|U|577
6HCJ|1|A2|C|578
6HCJ|1|A2|C|579
6HCJ|1|A2|U|580
6HCJ|1|A2|U|581
6HCJ|1|A2|U|582
6HCJ|1|A2|A|583
6HCJ|1|A2|A|584
6HCJ|1|A2|C|585
6HCJ|1|A2|G|586
6HCJ|1|A2|A|587
6HCJ|1|A2|G|588
6HCJ|1|A2|G|589
6HCJ|1|A2|A|590
6HCJ|1|A2|U|591
6HCJ|1|A2|C|592

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain K2

Ribosomal protein S9 (Predicted)

Chain Z2

eS24

Chain f2

40S ribosomal protein S30