HL_6HCJ_150

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAGCCGC

Length

8 nucleotides

Bulged bases

6HCJ|1|A2|G|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_150 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3907

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6HCJ|1|A2|G|617
6HCJ|1|A2|C|618
6HCJ|1|A2|A|619
6HCJ|1|A2|G|620
6HCJ|1|A2|C|621
6HCJ|1|A2|C|622
6HCJ|1|A2|G|623
6HCJ|1|A2|C|624

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain Y2

uS12

Chain f2

40S ribosomal protein S30

Chain v3

mRNA