HL_6HCJ_151

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGGUGAAAUUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|G|956
6HCJ|1|A2|A|957
6HCJ|1|A2|G|958
6HCJ|1|A2|G|959
6HCJ|1|A2|U|960
6HCJ|1|A2|G|961
6HCJ|1|A2|A|962
6HCJ|1|A2|A|963
6HCJ|1|A2|A|964
6HCJ|1|A2|U|965
6HCJ|1|A2|U|966
6HCJ|1|A2|C|967

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain G2

Ribosomal protein S5

Chain P2

uS11

Chain b2

eS26

Chain v3

mRNA