HL_6HCJ_154

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACAGAUUGAUAGCUCUUUC

Length

20 nucleotides

Bulged bases

6HCJ|1|A2|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|G|1290
6HCJ|1|A2|A|1291
6HCJ|1|A2|C|1292
6HCJ|1|A2|A|1293
6HCJ|1|A2|G|1294
6HCJ|1|A2|A|1295
6HCJ|1|A2|U|1296
6HCJ|1|A2|U|1297
6HCJ|1|A2|G|1298
6HCJ|1|A2|A|1299
6HCJ|1|A2|U|1300
6HCJ|1|A2|A|1301
6HCJ|1|A2|G|1302
6HCJ|1|A2|C|1303
6HCJ|1|A2|U|1304
6HCJ|1|A2|C|1305
6HCJ|1|A2|U|1306
6HCJ|1|A2|U|1307
6HCJ|1|A2|U|1308
6HCJ|1|A2|C|1309

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain L2

eS10

Chain N2

40S ribosomal protein S12

Chain Q2

uS19

Chain e2

uS14

Chain g2

Ribosomal protein S27a