HL_6HCJ_155

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGUUAAUUCCG

Length

13 nucleotides

Bulged bases

6HCJ|1|A2|U|1364, 6HCJ|1|A2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|C|1363
6HCJ|1|A2|U|1364
6HCJ|1|A2|G|1365
6HCJ|1|A2|G|1366
6HCJ|1|A2|U|1367
6HCJ|1|A2|U|1368
6HCJ|1|A2|A|1369
6HCJ|1|A2|A|1370
6HCJ|1|A2|U|1371
6HCJ|1|A2|U|1372
6HCJ|1|A2|C|1373
6HCJ|1|A2|C|1374
6HCJ|1|A2|G|1375

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain S2

eS17

Chain b2

eS26