HL_6HCJ_167

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUUUUGGUAAGCAGAACU

Length

19 nucleotides

Bulged bases

6HCJ|1|51|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|A|1858
6HCJ|1|51|C|1859
6HCJ|1|51|U|1860
6HCJ|1|51|U|1861
6HCJ|1|51|U|1862
6HCJ|1|51|U|1863
6HCJ|1|51|G|1864
6HCJ|1|51|G|1865
6HCJ|1|51|U|1866
6HCJ|1|51|A|1867
6HCJ|1|51|A|1868
6HCJ|1|51|G|1869
6HCJ|1|51|C|1870
6HCJ|1|51|A|1871
6HCJ|1|51|G|1872
6HCJ|1|51|A|1873
6HCJ|1|51|A|1874
6HCJ|1|51|C|1875
6HCJ|1|51|U|1876

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 71

5S ribosomal RNA; 5S rRNA

Chain F3

uL30

Chain I3

60S ribosomal protein L10

Chain b3

eL29