HL_6HCJ_168

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_168 not in the Motif Atlas

Homologous match to HL_8CRE_030

Geometric discrepancy: 0.2857

The information below is about HL_8CRE_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6HCJ|1|51|A|2376
6HCJ|1|51|C|2377
6HCJ|1|51|G|2378
6HCJ|1|51|A|2379
6HCJ|1|51|G|2380
6HCJ|1|51|A|2381
6HCJ|1|51|A|2382
6HCJ|1|51|C|2383
6HCJ|1|51|U|2384

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain P3

uL22

Chain R3

eL19

Chain d3

eL31