HL_6HCJ_180
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- 6HCJ|1|q3|U|33
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCJ_180 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.2679
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6HCJ|1|q3|A|31
6HCJ|1|q3|U|32
6HCJ|1|q3|U|33
6HCJ|1|q3|G|34
6HCJ|1|q3|A|35
6HCJ|1|q3|A|36
6HCJ|1|q3|A|37
6HCJ|1|q3|A|38
6HCJ|1|q3|U|39
Current chains
- Chain q3
- A/P RNA
Nearby chains
- Chain 51
- Large subunit ribosomal RNA; LSU rRNA
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Y2
- uS12
- Chain v3
- mRNA
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