HL_6HCM_003

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_003 not in the Motif Atlas

Homologous match to HL_1U0B_003

Geometric discrepancy: 0.1906

The information below is about HL_1U0B_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6HCM|1|23|G|53
6HCM|1|23|U|54
6HCM|1|23|U|55
6HCM|1|23|C|56
6HCM|1|23|G|57
6HCM|1|23|A|58
6HCM|1|23|A|59
6HCM|1|23|A|60
6HCM|1|23|C|61

Current chains

Chain 23

P-site tRNA

Nearby chains

Chain 52

Large subunit ribosomal RNA; LSU rRNA

Chain J3

Ribosomal protein L11

Chain o3

eL42