6HCM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6HCM_001 | 1/23/12:23 | No text annotation | homologous HL_1SER_001 NA | |
| HL_6HCM_002 | 1/23/31:39 | tRNA anticodon loop | homologous HL_6UFM_002 HL_06059.7 | |
| HL_6HCM_003 | 1/23/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1U0B_003 HL_28252.9 | |
| HL_6HCM_157 | 1/52/37:44 | No text annotation | homologous HL_8CRE_001 HL_30068.2 | |
| HL_6HCM_005 | 1/52/68:73 | No text annotation | homologous HL_5TBW_002 NA | |
| HL_6HCM_006 | 1/52/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6HCM_007 | 1/52/131:137 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_6HCM_008 | 1/52/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6HCM_009 | 1/52/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_6HCM_010 | 1/52/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_6HCM_011 | 1/52/289:298 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_6HCM_012 | 1/52/314:323 | Pseudoknot geometry | geometric HL_4QLM_002 HL_77600.2 | |
| HL_6HCM_013 | 1/52/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6HCM_014 | 1/52/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6HCM_158 | 1/52/519:642 | No text annotation | ||
| HL_6HCM_159 | 1/52/757:906 | No text annotation | ||
| HL_6HCM_016 | 1/52/759:904 | No text annotation | ||
| HL_6HCM_160 | 1/52/962:970 | No text annotation | ||
| HL_6HCM_120 | 1/52/989:1065 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_6HCM_018 | 1/52/1178:1183 | GNRA | geometric HL_3V7E_003 HL_37824.8 | |
| HL_6HCM_161 | 1/52/1317:1326 | No text annotation | homologous HL_8CRE_013 HL_28252.9 | |
| HL_6HCM_020 | 1/52/1362:1375 | No text annotation | ||
| HL_6HCM_021 | 1/52/1389:1394 | GNRA | homologous HL_5TBW_016 NA | |
| HL_6HCM_162 | 1/52/1406A:1411B | No text annotation | ||
| HL_6HCM_121 | 1/52/1431:1453 | No text annotation | ||
| HL_6HCM_023 | 1/52/1436:1448 | No text annotation | ||
| HL_6HCM_024 | 1/52/1479:1486 | No text annotation | ||
| HL_6HCM_025 | 1/52/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_6HCM_163 | 1/52/1590:1604 | No text annotation | ||
| HL_6HCM_026 | 1/52/1592:1603 | No text annotation | ||
| HL_6HCM_123 | 1/52/1626:1636 | No text annotation | ||
| HL_6HCM_027 | 1/52/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6HCM_028 | 1/52/1675:1680 | No text annotation | geometric HL_4V9F_026 HL_55195.3 | |
| HL_6HCM_164 | 1/52/1759:1773 | No text annotation | ||
| HL_6HCM_125 | 1/52/1814:1824 | No text annotation | ||
| HL_6HCM_030 | 1/52/1816:1823 | No text annotation | ||
| HL_6HCM_031 | 1/52/1864:1870 | GNRA | homologous HL_5TBW_025 NA | |
| HL_6HCM_032 | 1/52/1886:1893 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6HCM_033 | 1/52/1978:1988 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_6HCM_165 | 1/52/2006:2013 | No text annotation | homologous HL_8P9A_140 HL_81538.2 | |
| HL_6HCM_035 | 1/52/2087:2270 | No text annotation | ||
| HL_6HCM_036 | 1/52/2317:2322 | GNRA | homologous HL_5TBW_030 NA | |
| HL_6HCM_127 | 1/52/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6HCM_166 | 1/52/2420:2426 | No text annotation | homologous HL_8CRE_031 HL_57176.2 | |
| HL_6HCM_039 | 1/52/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6HCM_040 | 1/52/2482:2496 | No text annotation | ||
| HL_6HCM_167 | 1/52/2523:2532 | No text annotation | homologous HL_8CRE_034 HL_81545.2 | |
| HL_6HCM_042 | 1/52/2561:2566 | GNRA | geometric HL_4C7O_001 HL_37824.8 | |
| HL_6HCM_043 | 1/52/2577:2584 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6HCM_168 | 1/52/2623:2633 | No text annotation | ||
| HL_6HCM_045 | 1/52/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_6HCM_131 | 1/52/2704:2712 | No text annotation | ||
| HL_6HCM_046 | 1/52/2705:2710 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6HCM_047 | 1/52/2738:2742 | No text annotation | ||
| HL_6HCM_048 | 1/52/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6HCM_049 | 1/52/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6HCM_050 | 1/52/2872:2877 | UNCG | geometric HL_4PMI_004 HL_34617.5 | |
| HL_6HCM_169 | 1/52/2901:3598 | No text annotation | ||
| HL_6HCM_052 | 1/52/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6HCM_170 | 1/52/3639:3649 | No text annotation | homologous HL_8CRE_044 HL_01962.2 | |
| HL_6HCM_054 | 1/52/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6HCM_171 | 1/52/3724:3729 | GNRA | homologous HL_8P9A_159 HL_37824.8 | |
| HL_6HCM_134 | 1/52/3756:3768 | No text annotation | homologous HL_8P9A_160 HL_70658.1 | |
| HL_6HCM_056 | 1/52/3757:3767 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_6HCM_172 | 1/52/3796:3804 | No text annotation | homologous HL_8CRE_048 HL_20167.2 | |
| HL_6HCM_058 | 1/52/3872:3883 | No text annotation | ||
| HL_6HCM_136 | 1/52/4137:4147 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_6HCM_137 | 1/52/4191:4204 | No text annotation | ||
| HL_6HCM_060 | 1/52/4192:4202 | No text annotation | ||
| HL_6HCM_061 | 1/52/4208:4224 | No text annotation | ||
| HL_6HCM_062 | 1/52/4250:4258 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_6HCM_063 | 1/52/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6HCM_064 | 1/52/4301:4309 | No text annotation | homologous HL_5TBW_058 NA | |
| HL_6HCM_173 | 1/52/4321:4326 | GNRA | homologous HL_8P9A_170 HL_37824.8 | |
| HL_6HCM_141 | 1/52/4347:4365 | No text annotation | ||
| HL_6HCM_066 | 1/52/4352:4362 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_6HCM_142 | 1/52/4412:4430 | No text annotation | ||
| HL_6HCM_067 | 1/52/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6HCM_068 | 1/52/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6HCM_144 | 1/52/4495:4505 | No text annotation | ||
| HL_6HCM_069 | 1/52/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6HCM_070 | 1/52/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6HCM_071 | 1/52/4603:4608 | GNRA | geometric HL_5J7L_197 HL_37824.8 | |
| HL_6HCM_072 | 1/52/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6HCM_174 | 1/52/4680:4710 | No text annotation | ||
| HL_6HCM_073 | 1/52/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6HCM_074 | 1/52/4775:4860 | tRNA D-loop | geometric HL_3AL0_001 HL_20811.4 | |
| HL_6HCM_075 | 1/52/4906:4915 | No text annotation | ||
| HL_6HCM_076 | 1/52/4975:4983 | No text annotation | homologous HL_5TBW_070 NA | |
| HL_6HCM_077 | 1/52/5021:5028 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6HCM_175 | 1/72/32:45 | No text annotation | homologous HL_8OI5_068 HL_13971.1 | |
| HL_6HCM_078 | 1/72/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_6HCM_147 | 1/72/79:97 | No text annotation | ||
| HL_6HCM_079 | 1/72/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6HCM_080 | 1/82/46:57 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_6HCM_082 | 1/82/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6HCM_083 | 1/82/120:130 | No text annotation | ||
| HL_6HCM_084 | 1/A1/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6HCM_085 | 1/A1/69:80 | No text annotation | ||
| HL_6HCM_086 | 1/A1/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6HCM_087 | 1/A1/197:202 | GNRA | geometric HL_5J7L_007 HL_37824.8 | |
| HL_6HCM_088 | 1/A1/288:295 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_6HCM_089 | 1/A1/377:387 | No text annotation | ||
| HL_6HCM_090 | 1/A1/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6HCM_176 | 1/A1/441:452 | No text annotation | homologous HL_8CRE_200 HL_06226.4 | |
| HL_6HCM_092 | 1/A1/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6HCM_093 | 1/A1/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6HCM_177 | 1/A1/535:549 | No text annotation | ||
| HL_6HCM_094 | 1/A1/538:545 | No text annotation | geometric HL_2Y9H_005 HL_86870.2 | |
| HL_6HCM_150 | 1/A1/566:584 | No text annotation | ||
| HL_6HCM_095 | 1/A1/569:581 | No text annotation | geometric HL_4V88_199 NA | |
| HL_6HCM_096 | 1/A1/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6HCM_178 | 1/A1/885:901 | No text annotation | ||
| HL_6HCM_099 | 1/A1/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6HCM_100 | 1/A1/993:1000 | GNRA with extra cWW | geometric HL_7A0S_056 HL_04259.3 | |
| HL_6HCM_101 | 1/A1/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6HCM_152 | 1/A1/1112:1121 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_6HCM_103 | 1/A1/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6HCM_104 | 1/A1/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6HCM_105 | 1/A1/1245:1254 | No text annotation | geometric HL_4V88_212 NA | |
| HL_6HCM_179 | 1/A1/1295:1304 | No text annotation | homologous HL_8CRE_217 HL_81538.2 | |
| HL_6HCM_107 | 1/A1/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6HCM_155 | 1/A1/1363:1375 | No text annotation | ||
| HL_6HCM_108 | 1/A1/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6HCM_110 | 1/A1/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_6HCM_111 | 1/A1/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6HCM_156 | 1/A1/1613:1626 | No text annotation | ||
| HL_6HCM_112 | 1/A1/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6HCM_113 | 1/A1/1654:1670 | No text annotation | ||
| HL_6HCM_115 | 1/A1/1847:1852 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6HCM_116 | No text annotation | ||
| HL_6HCM_004 | No text annotation | ||
| HL_6HCM_117 | tRNA D-loop | ||
| HL_6HCM_118 | No text annotation | ||
| HL_6HCM_015 | No text annotation | ||
| HL_6HCM_119 | No text annotation | ||
| HL_6HCM_017 | No text annotation | ||
| HL_6HCM_019 | No text annotation | ||
| HL_6HCM_022 | No text annotation | ||
| HL_6HCM_122 | No text annotation | ||
| HL_6HCM_029 | No text annotation | ||
| HL_6HCM_124 | No text annotation | ||
| HL_6HCM_126 | No text annotation | ||
| HL_6HCM_034 | No text annotation | ||
| HL_6HCM_037 | No text annotation | ||
| HL_6HCM_038 | No text annotation | ||
| HL_6HCM_128 | No text annotation | ||
| HL_6HCM_129 | No text annotation | ||
| HL_6HCM_041 | No text annotation | ||
| HL_6HCM_130 | No text annotation | ||
| HL_6HCM_044 | No text annotation | ||
| HL_6HCM_132 | tRNA D-loop | ||
| HL_6HCM_051 | No text annotation | ||
| HL_6HCM_053 | No text annotation | ||
| HL_6HCM_133 | tRNA D-loop | ||
| HL_6HCM_055 | No text annotation | ||
| HL_6HCM_135 | No text annotation | ||
| HL_6HCM_057 | No text annotation | ||
| HL_6HCM_059 | No text annotation | ||
| HL_6HCM_138 | No text annotation | ||
| HL_6HCM_139 | tRNA anticodon loop | ||
| HL_6HCM_140 | No text annotation | ||
| HL_6HCM_065 | GNRA with extra cWW | ||
| HL_6HCM_143 | No text annotation | ||
| HL_6HCM_145 | No text annotation | ||
| HL_6HCM_146 | No text annotation | ||
| HL_6HCM_081 | No text annotation | ||
| HL_6HCM_148 | No text annotation | ||
| HL_6HCM_091 | No text annotation | ||
| HL_6HCM_149 | No text annotation | ||
| HL_6HCM_097 | No text annotation | ||
| HL_6HCM_098 | No text annotation | ||
| HL_6HCM_151 | No text annotation | ||
| HL_6HCM_102 | No text annotation | ||
| HL_6HCM_153 | GNRA with near cWW | ||
| HL_6HCM_154 | No text annotation | ||
| HL_6HCM_106 | No text annotation | ||
| HL_6HCM_109 | No text annotation | ||
| HL_6HCM_114 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6HCM_001 | 1/23/2:4, 1/23/69:71 | No text annotation | homologous IL_5EL4_357 NA | |
| IL_6HCM_307 | 1/52/6:7, 1/82/149:151 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_6HCM_003 | 1/52/12:14, 1/82/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6HCM_308 | 1/52/30:37, 1/52/44:52 | tSH-tHW-tHH-tHS | homologous IL_8CRE_005 IL_84694.2 | |
| IL_6HCM_309 | 1/52/81:88, 1/52/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_65594.1 | |
| IL_6HCM_005 | 1/52/118:121, 1/52/152:153 | Minor groove platform | geometric IL_4LFB_007 IL_33761.2 | |
| IL_6HCM_227 | 1/52/118:126, 1/52/142:153 | No text annotation | ||
| IL_6HCM_006 | 1/52/121:122, 1/52/147:152 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_6HCM_228 | 1/52/121:126, 1/52/142:152 | No text annotation | ||
| IL_6HCM_007 | 1/52/124:126, 1/52/142:145 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6HCM_310 | 1/52/168:173, 1/52/263:267 | No text annotation | ||
| IL_6HCM_008 | 1/52/179:189, 1/52/252:257 | No text annotation | ||
| IL_6HCM_009 | 1/52/195:196, 1/52/244:246 | No text annotation | ||
| IL_6HCM_010 | 1/52/339:342, 1/82/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_6HCM_311 | 1/52/347:379, 1/82/21:27 | No text annotation | ||
| IL_6HCM_011 | 1/52/348:350, 1/82/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6HCM_012 | 1/52/387:390, 1/52/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6HCM_013 | 1/52/415:421, 1/82/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_6HCM_312 | 1/52/438:450, 1/52/1297:1309 | No text annotation | ||
| IL_6HCM_014 | 1/52/443:447, 1/52/1299:1304 | No text annotation | ||
| IL_6HCM_015 | 1/52/448:451, 1/52/1296:1298 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 | |
| IL_6HCM_016 | 1/52/459:460, 1/52/695:697 | No text annotation | ||
| IL_6HCM_313 | 1/52/462:464, 1/52/691:693 | Isolated non-canonical cWW pair | geometric IL_8P9A_270 IL_87907.2 | |
| IL_6HCM_018 | 1/52/466:472, 1/52/682:689 | No text annotation | ||
| IL_6HCM_019 | 1/52/481:482, 1/52/672:673 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
| IL_6HCM_020 | 1/52/482:487, 1/52/669:672 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_6HCM_233 | 1/52/482:493, 1/52/661:672 | No text annotation | ||
| IL_6HCM_021 | 1/52/487:488, 1/52/665:669 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
| IL_6HCM_022 | 1/52/491:493, 1/52/661:662 | No text annotation | ||
| IL_6HCM_314 | 1/52/497:499, 1/52/656:657 | No text annotation | ||
| IL_6HCM_024 | 1/52/508:510, 1/52/649:650 | Single bulged A | geometric IL_6WPI_001 IL_31462.7 | |
| IL_6HCM_234 | 1/52/707:710, 1/52/1286:1290 | Tandem non-canonical cWW pairs | geometric IL_7KJT_003 NA | |
| IL_6HCM_025 | 1/52/709:710, 1/52/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_00225.14 | |
| IL_6HCM_026 | 1/52/723:725, 1/52/941:945 | No text annotation | ||
| IL_6HCM_027 | 1/52/727:731, 1/52/938:939 | No text annotation | ||
| IL_6HCM_235 | 1/52/727:737, 1/52/927:939 | No text annotation | ||
| IL_6HCM_028 | 1/52/731:737, 1/52/927:938 | No text annotation | ||
| IL_6HCM_029 | 1/52/737:739, 1/52/923:927 | No text annotation | ||
| IL_6HCM_315 | 1/52/745:752, 1/52/911:919 | No text annotation | geometric IL_8P9A_248 IL_43858.1 | |
| IL_6HCM_031 | 1/52/1074:1077, 1/52/1233:1236 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_6HCM_316 | 1/52/1077:1080, 1/52/1219:1233 | No text annotation | ||
| IL_6HCM_033 | 1/52/1082:1084, 1/52/1213:1217 | Isolated near basepair | geometric IL_7A0S_030 IL_42997.3 | |
| IL_6HCM_034 | 1/52/1086:1087, 1/52/1209:1211 | No text annotation | ||
| IL_6HCM_035 | 1/52/1097:1098, 1/52/1197:1199 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6HCM_317 | 1/52/1173:1177, 1/52/1184:1188 | No text annotation | ||
| IL_6HCM_037 | 1/52/1357:1360, 1/52/1379:1382 | No text annotation | ||
| IL_6HCM_238 | 1/52/1357:1361, 1/52/1376:1382 | No text annotation | ||
| IL_6HCM_038 | 1/52/1360:1361, 1/52/1376:1379 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.5 | |
| IL_6HCM_039 | 1/52/1425:1430, 1/52/1454:1460 | No text annotation | ||
| IL_6HCM_040 | 1/52/1431:1435, 1/52/1449:1453 | Triple sheared | geometric IL_7A0S_087 IL_17948.2 | |
| IL_6HCM_041 | 1/52/1466:1472, 1/52/1492:1499 | No text annotation | ||
| IL_6HCM_042 | 1/52/1474:1476, 1/52/1489:1490 | No text annotation | ||
| IL_6HCM_239 | 1/52/1474:1478, 1/52/1487:1490 | No text annotation | ||
| IL_6HCM_043 | 1/52/1520:1522, 1/52/1655:1657 | Isolated non-canonical cWW pair | homologous IL_5TBW_027 NA | |
| IL_6HCM_044 | 1/52/1522:1526, 1/52/1648:1655 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_6HCM_318 | 1/52/1530:1537, 1/52/1622:1644 | No text annotation | ||
| IL_6HCM_045 | 1/52/1550:1551, 1/52/1576:1578 | Single bulged G | geometric IL_4LVW_002 IL_00225.14 | |
| IL_6HCM_319 | 1/52/1551:1555, 1/52/1572:1576 | Triple sheared | homologous IL_8CRE_033 IL_50730.2 | |
| IL_6HCM_047 | 1/52/1585:1589, 1/52/1605:1608 | No text annotation | ||
| IL_6HCM_048 | 1/52/1590:1592, 1/52/1603:1604 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_6HCM_049 | 1/52/1624:1626, 1/52/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6HCM_050 | 1/52/1671:1673, 1/52/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6HCM_051 | 1/52/1686:1689, 1/52/1847:1851 | No text annotation | ||
| IL_6HCM_320 | 1/52/1694:1721, 1/52/1841:1842 | No text annotation | ||
| IL_6HCM_053 | 1/52/1723:1725, 1/52/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6HCM_243 | 1/52/1731:1738, 1/52/1790:1798 | No text annotation | ||
| IL_6HCM_054 | 1/52/1732:1738, 1/52/1790:1797 | No text annotation | ||
| IL_6HCM_321 | 1/52/1739:1744, 1/52/1786:1789 | No text annotation | homologous IL_8CRE_043 IL_26222.2 | |
| IL_6HCM_056 | 1/52/1746:1751, 1/52/1779:1784 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_6HCM_322 | 1/52/1753:1756, 1/52/1776:1777 | Major groove minor groove platform; mini C-loop | geometric IL_1U9S_004 IL_68140.4 | |
| IL_6HCM_058 | 1/52/1814:1816, 1/52/1823:1824 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_6HCM_323 | 1/52/1858:1860, 1/52/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8CRE_049 IL_87907.2 | |
| IL_6HCM_061 | 1/52/1905:1909, 1/52/2067:2071 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6HCM_062 | 1/52/1911:1920, 1/52/2063:2065 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_87907.2 | |
| IL_6HCM_063 | 1/52/1920:1922, 1/52/2062:2063 | Single bulged C | geometric IL_3SNP_003 IL_61258.15 | |
| IL_6HCM_064 | 1/52/1926:1933, 1/52/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_6HCM_065 | 1/52/1933:1944, 1/52/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6HCM_066 | 1/52/1946:1948, 1/52/2035:2036 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_6HCM_249 | 1/52/1949:2005, 1/52/2014:2034 | No text annotation | ||
| IL_6HCM_067 | 1/52/2001:2005, 1/52/2014:2016 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_51387.3 | |
| IL_6HCM_068 | 1/52/2083:2085, 1/52/2272:2273 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_6HCM_069 | 1/52/2298:2302, 1/52/2333:2336 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 IL_85033.2 | |
| IL_6HCM_070 | 1/52/2302:2309, 1/52/2329:2333 | Kink-turn | geometric IL_3V7E_002 IL_70923.9 | |
| IL_6HCM_324 | 1/52/2312:2315, 1/52/2324:2326 | No text annotation | homologous IL_8CRE_064 IL_07785.1 | |
| IL_6HCM_072 | 1/52/2358:2364, 1/52/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6HCM_073 | 1/52/2415:2419, 1/52/2427:2429 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
| IL_6HCM_074 | 1/52/2446:2450, 1/52/2509:2514 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_6HCM_075 | 1/52/2477:2479, 1/52/2499:2500 | Single stack bend | geometric IL_5VSU_003 IL_26793.1 | |
| IL_6HCM_076 | 1/52/2540:2542, 1/52/2775:2776 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6HCM_077 | 1/52/2542:2547, 1/52/2772:2775 | No text annotation | ||
| IL_6HCM_325 | 1/52/2596:2602, 1/52/2737:2749 | No text annotation | ||
| IL_6HCM_078 | 1/52/2613:2614, 1/52/2724:2726 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_6HCM_079 | 1/52/2614:2615, 1/52/2722:2724 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_6HCM_080 | 1/52/2646:2648, 1/52/2685:2688 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_6HCM_081 | 1/52/2651:2653, 1/52/2681:2682 | Single bulged G | geometric IL_7D7W_002 IL_00225.14 | |
| IL_6HCM_253 | 1/52/2651:2662, 1/52/2672:2682 | No text annotation | ||
| IL_6HCM_082 | 1/52/2655:2662, 1/52/2672:2679 | Kink-turn | geometric IL_5TBW_073 NA | |
| IL_6HCM_083 | 1/52/2704:2705, 1/52/2710:2712 | No text annotation | ||
| IL_6HCM_326 | 1/52/2832:2838, 1/52/3850:3853 | No text annotation | homologous IL_8P9A_302 IL_22829.2 | |
| IL_6HCM_085 | 1/52/2843:2846, 1/52/3842:3845 | No text annotation | ||
| IL_6HCM_086 | 1/52/2864:2865, 1/52/2885:2887 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_6HCM_087 | 1/52/2867:2872, 1/52/2877:2883 | tSH-tSH-tHH-tHS | homologous IL_5TBW_078 NA | |
| IL_6HCM_088 | 1/52/2888:2891, 1/52/3610:3613 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_6HCM_089 | 1/52/2896:2897, 1/52/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6HCM_327 | 1/52/3631:3633, 1/52/3827:3830 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_87907.2 | |
| IL_6HCM_090 | 1/52/3632:3633, 1/52/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6HCM_091 | 1/52/3660:3665, 1/52/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6HCM_092 | 1/52/3700:3703, 1/52/3749:3750 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6HCM_328 | 1/52/3704:3705, 1/52/3745:3748 | No text annotation | homologous IL_8CRE_090 IL_82107.5 | |
| IL_6HCM_094 | 1/52/3708:3710, 1/52/3741:3742 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_6HCM_329 | 1/52/3710:3721, 1/52/3732:3741 | No text annotation | ||
| IL_6HCM_095 | 1/52/3780:3792, 1/52/3808:3814 | No text annotation | ||
| IL_6HCM_330 | 1/52/3895:3898, 1/52/4563:4565 | No text annotation | homologous IL_8P9A_319 IL_55516.2 | |
| IL_6HCM_097 | 1/52/3899:3902, 1/52/4558:4562 | No text annotation | ||
| IL_6HCM_098 | 1/52/3913:3915, 1/52/4388:4389 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6HCM_099 | 1/52/3926:3929, 1/52/4181:4185 | No text annotation | ||
| IL_6HCM_100 | 1/52/3946:3950, 1/52/4062:4066 | No text annotation | ||
| IL_6HCM_260 | 1/52/3946:3952, 1/52/4060:4066 | No text annotation | ||
| IL_6HCM_101 | 1/52/3950:3952, 1/52/4060:4062 | Isolated near basepair | geometric IL_4V88_406 NA | |
| IL_6HCM_102 | 1/52/3955:3966, 1/52/4055:4057 | Isolated non-canonical cWW pair | geometric IL_5TBW_378 NA | |
| IL_6HCM_331 | 1/52/3970:3973, 1/52/4038:4051 | No text annotation | ||
| IL_6HCM_332 | 1/52/4082:4088, 1/52/4161:4164 | No text annotation | homologous IL_8CRE_106 IL_00555.1 | |
| IL_6HCM_333 | 1/52/4091:4129, 1/52/4155:4158 | No text annotation | ||
| IL_6HCM_105 | 1/52/4191:4192, 1/52/4202:4204 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6HCM_106 | 1/52/4243:4245, 1/52/4263:4267 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_6HCM_334 | 1/52/4291:4293, 1/52/4317:4318 | Single bulged A | geometric IL_7MKY_001 IL_31462.7 | |
| IL_6HCM_108 | 1/52/4295:4297, 1/52/4314:4315 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6HCM_335 | 1/52/4297:4298, 1/52/4312:4314 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6HCM_110 | 1/52/4347:4352, 1/52/4362:4365 | No text annotation | ||
| IL_6HCM_111 | 1/52/4400:4408, 1/52/4434:4444 | No text annotation | ||
| IL_6HCM_112 | 1/52/4412:4416, 1/52/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6HCM_113 | 1/52/4453:4454, 1/52/4526:4528 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6HCM_114 | 1/52/4456:4458, 1/52/4520:4524 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_6HCM_336 | 1/52/4458:4459, 1/52/4517:4520 | No text annotation | homologous IL_8CRE_117 IL_42626.2 | |
| IL_6HCM_116 | 1/52/4466:4470, 1/52/4485:4491 | No text annotation | ||
| IL_6HCM_117 | 1/52/4495:4497, 1/52/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_6HCM_337 | 1/52/4534:4538, 1/52/4547:4552 | No text annotation | geometric IL_8P9A_349 IL_49751.4 | |
| IL_6HCM_118 | 1/52/4537:4538, 1/52/4547:4549 | Single bulged A | geometric IL_4V88_409 NA | |
| IL_6HCM_119 | 1/52/4578:4580, 1/52/4724:4725 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6HCM_120 | 1/52/4580:4582, 1/52/4721:4724 | No text annotation | ||
| IL_6HCM_338 | 1/52/4580:4585, 1/52/4717:4724 | No text annotation | ||
| IL_6HCM_121 | 1/52/4582:4585, 1/52/4717:4721 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_6HCM_122 | 1/52/4590:4592, 1/52/4618:4620 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_6HCM_123 | 1/52/4596:4603, 1/52/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_116 NA | |
| IL_6HCM_124 | 1/52/4623:4630, 1/52/4668:4674 | No text annotation | ||
| IL_6HCM_339 | 1/52/4624:4637, 1/52/4662:4673 | No text annotation | ||
| IL_6HCM_125 | 1/52/4632:4637, 1/52/4662:4666 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6HCM_126 | 1/52/4637:4642, 1/52/4655:4662 | No text annotation | ||
| IL_6HCM_340 | 1/52/4638:4644, 1/52/4653:4661 | No text annotation | ||
| IL_6HCM_127 | 1/52/4679:4685, 1/52/4705:4711 | No text annotation | ||
| IL_6HCM_341 | 1/52/4739:4746, 1/52/4954:4960 | No text annotation | ||
| IL_6HCM_342 | 1/52/4754:4766, 1/52/4868:4879 | No text annotation | ||
| IL_6HCM_271 | 1/52/4769:4773, 1/52/4862:4865 | No text annotation | geometric IL_2O3Y_003 IL_51479.1 | |
| IL_6HCM_130 | 1/52/4884:4888, 1/52/4931:4935 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_49751.4 | |
| IL_6HCM_131 | 1/52/4890:4896, 1/52/4924:4929 | No text annotation | ||
| IL_6HCM_132 | 1/52/4896:4902, 1/52/4919:4924 | No text annotation | ||
| IL_6HCM_343 | 1/52/4898:4903, 1/52/4918:4922 | No text annotation | ||
| IL_6HCM_344 | 1/52/4970:4991, 1/52/5060:5063 | No text annotation | ||
| IL_6HCM_345 | 1/52/4992:4994, 1/52/5057:5059 | Isolated non-canonical cWW pair | geometric IL_7QUA_003 IL_87907.2 | |
| IL_6HCM_346 | 1/52/4996:4997, 1/52/5053:5055 | No text annotation | ||
| IL_6HCM_135 | 1/52/5000:5003, 1/52/5044:5050 | No text annotation | ||
| IL_6HCM_347 | 1/52/5000:5009, 1/52/5039:5050 | No text annotation | ||
| IL_6HCM_136 | 1/52/5003:5009, 1/52/5039:5044 | No text annotation | ||
| IL_6HCM_137 | 1/52/5012:5017, 1/52/5032:5036 | No text annotation | ||
| IL_6HCM_138 | 1/72/15:16, 1/72/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6HCM_139 | 1/72/21:27, 1/72/52:57 | Minor groove platform related | geometric IL_5TBW_373 NA | |
| IL_6HCM_348 | 1/72/21:29, 1/72/48:57 | No text annotation | ||
| IL_6HCM_140 | 1/72/27:30, 1/72/47:52 | No text annotation | ||
| IL_6HCM_141 | 1/72/32:36, 1/72/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_6HCM_142 | 1/72/71:78, 1/72/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6HCM_143 | 1/72/79:85, 1/72/92:97 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_6HCM_144 | 1/A1/23:25, 1/A1/649:651 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_87907.2 | |
| IL_6HCM_145 | 1/A1/34:36, 1/A1/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6HCM_146 | 1/A1/37:40, 1/A1/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_6HCM_147 | 1/A1/41:47, 1/A1/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_6HCM_148 | 1/A1/49:51, 1/A1/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6HCM_149 | 1/A1/57:62, 1/A1/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6HCM_150 | 1/A1/63:69, 1/A1/80:85 | No text annotation | geometric IL_1M5K_001 IL_80926.1 | |
| IL_6HCM_151 | 1/A1/108:110, 1/A1/351:353 | Isolated non-canonical cWW pair | geometric IL_1ZX7_004 NA | |
| IL_6HCM_279 | 1/A1/108:115, 1/A1/348:353 | No text annotation | geometric IL_5TBW_476 NA | |
| IL_6HCM_152 | 1/A1/110:115, 1/A1/348:351 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_6HCM_153 | 1/A1/116:121, 1/A1/343:347 | No text annotation | homologous IL_4V88_393 NA | |
| IL_6HCM_281 | 1/A1/144:146, 1/A1/174:175 | Single stack bend | geometric IL_7MLX_001 IL_90729.1 | |
| IL_6HCM_282 | 1/A1/146:151, 1/A1/167:174 | No text annotation | ||
| IL_6HCM_156 | 1/A1/152:154, 1/A1/164:166 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
| IL_6HCM_157 | 1/A1/188:192, 1/A1/207:211 | Triple sheared | geometric IL_4WFL_001 IL_17948.2 | |
| IL_6HCM_283 | 1/A1/220:221, 1/A1/300:302 | Single stack bend | geometric IL_8C3A_146 NA | |
| IL_6HCM_349 | 1/A1/312:314, 1/A1/336:337 | Single bulged A | homologous IL_8P9A_388 IL_31462.7 | |
| IL_6HCM_160 | 1/A1/317:320, 1/A1/331:333 | No text annotation | homologous IL_4V88_400 NA | |
| IL_6HCM_161 | 1/A1/320:323, 1/A1/329:331 | No text annotation | ||
| IL_6HCM_162 | 1/A1/359:364, 1/A1/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6HCM_163 | 1/A1/366:371, 1/A1/393:394 | No text annotation | geometric IL_4ERD_001 IL_84476.1 | |
| IL_6HCM_286 | 1/A1/409:413, 1/A1/424:431 | No text annotation | ||
| IL_6HCM_164 | 1/A1/411:413, 1/A1/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6HCM_165 | 1/A1/436:439, 1/A1/454:457 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_6HCM_166 | 1/A1/459:462, 1/A1/467:470 | Tandem non-canonical cWW pairs | geometric IL_4EYA_010 IL_51479.1 | |
| IL_6HCM_167 | 1/A1/487:489, 1/A1/511:512 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_6HCM_168 | 1/A1/491:496, 1/A1/506:509 | C-loop with extra cWW pair | homologous IL_4V88_408 NA | |
| IL_6HCM_169 | 1/A1/527:528, 1/A1/557:559 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6HCM_350 | 1/A1/529:530, 1/A1/554:556 | Single bulged A | homologous IL_8P9A_399 IL_31462.7 | |
| IL_6HCM_171 | 1/A1/535:538, 1/A1/545:549 | No text annotation | ||
| IL_6HCM_172 | 1/A1/563:565, 1/A1/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_6HCM_173 | 1/A1/566:569, 1/A1/581:584 | Tandem non-canonical cWW pairs | geometric IL_6JDV_001 IL_77658.1 | |
| IL_6HCM_351 | 1/A1/599:608, 1/A1/635:637 | No text annotation | ||
| IL_6HCM_352 | 1/A1/611:617, 1/A1/624:632 | No text annotation | homologous IL_8P9A_404 IL_54177.4 | |
| IL_6HCM_176 | 1/A1/665:671, 1/A1/1161:1162 | No text annotation | homologous IL_4V88_416 NA | |
| IL_6HCM_177 | 1/A1/673:675, 1/A1/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6HCM_178 | 1/A1/676:680, 1/A1/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6HCM_179 | 1/A1/692:694, 1/A1/732:734 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_6HCM_180 | 1/A1/757:758, 1/A1/786:788 | Single stack bend | geometric IL_5J7L_044 IL_26793.1 | |
| IL_6HCM_181 | 1/A1/802:803, 1/A1/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6HCM_182 | 1/A1/805:807, 1/A1/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6HCM_183 | 1/A1/807:815, 1/A1/849:856 | No text annotation | geometric IL_4V88_425 NA | |
| IL_6HCM_184 | 1/A1/816:831, 1/A1/843:848 | No text annotation | ||
| IL_6HCM_185 | 1/A1/877:879, 1/A1/907:909 | Isolated cWH basepair | homologous IL_4V88_427 NA | |
| IL_6HCM_186 | 1/A1/922:923, 1/A1/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_6HCM_294 | 1/A1/922:926, 1/A1/1015:1022 | No text annotation | ||
| IL_6HCM_187 | 1/A1/924:927, 1/A1/1014:1018 | Tandem non-canonical cWW pairs | homologous IL_4V88_429 NA | |
| IL_6HCM_188 | 1/A1/927:935, 1/A1/1007:1014 | No text annotation | ||
| IL_6HCM_295 | 1/A1/938:945, 1/A1/981:1004 | No text annotation | ||
| IL_6HCM_189 | 1/A1/941:945, 1/A1/981:985 | Triple non-canonical cWW pairs | geometric IL_4LFB_065 IL_49751.4 | |
| IL_6HCM_190 | 1/A1/952:956, 1/A1/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6HCM_353 | 1/A1/1042:1047, 1/A1/1071:1073 | No text annotation | homologous IL_8CRE_437 IL_97273.1 | |
| IL_6HCM_192 | 1/A1/1047:1051, 1/A1/1067:1071 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_6HCM_193 | 1/A1/1098:1101, 1/A1/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_6HCM_194 | 1/A1/1101:1103, 1/A1/1129:1131 | Isolated cWH basepair | geometric IL_3D0M_002 NA | |
| IL_6HCM_195 | 1/A1/1108:1110, 1/A1/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6HCM_354 | 1/A1/1168:1175, 1/A1/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8P9A_428 IL_41756.4 | |
| IL_6HCM_197 | 1/A1/1206:1208, 1/A1/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6HCM_198 | 1/A1/1230:1232, 1/A1/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6HCM_199 | 1/A1/1235:1236, 1/A1/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6HCM_355 | 1/A1/1281:1290, 1/A1/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_6HCM_200 | 1/A1/1291:1294, 1/A1/1305:1308 | No text annotation | ||
| IL_6HCM_201 | 1/A1/1325:1327, 1/A1/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6HCM_202 | 1/A1/1329:1333, 1/A1/1498:1500 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_6HCM_298 | 1/A1/1329:1335, 1/A1/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_6HCM_203 | 1/A1/1333:1335, 1/A1/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_6HCM_204 | 1/A1/1337:1338, 1/A1/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6HCM_205 | 1/A1/1347:1349, 1/A1/1380:1382 | Isolated cWH basepair | geometric IL_4V88_453 NA | |
| IL_6HCM_206 | 1/A1/1363:1365, 1/A1/1374:1375 | Minor groove platform | geometric IL_6DLR_003 IL_51454.3 | |
| IL_6HCM_356 | 1/A1/1395:1399, 1/A1/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_85033.2 | |
| IL_6HCM_208 | 1/A1/1402:1405, 1/A1/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6HCM_300 | 1/A1/1537:1539, 1/A1/1594:1596 | Isolated non-canonical cWW pair | geometric IL_2OE5_001 IL_28037.2 | |
| IL_6HCM_301 | 1/A1/1541:1550, 1/A1/1582:1592 | No text annotation | ||
| IL_6HCM_210 | 1/A1/1550:1558, 1/A1/1577:1582 | No text annotation | ||
| IL_6HCM_211 | 1/A1/1560:1562, 1/A1/1573:1575 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_87907.2 | |
| IL_6HCM_212 | 1/A1/1604:1610, 1/A1/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6HCM_213 | 1/A1/1700:1702, 1/A1/1833:1836 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6HCM_214 | 1/A1/1702:1705, 1/A1/1829:1833 | No text annotation | geometric IL_5J7L_059 IL_65718.4 | |
| IL_6HCM_215 | 1/A1/1706:1708, 1/A1/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_6HCM_357 | 1/A1/1706:1711, 1/A1/1822:1828 | No text annotation | geometric IL_8SSW_003 IL_82292.1 | |
| IL_6HCM_216 | 1/A1/1708:1711, 1/A1/1822:1826 | No text annotation | geometric IL_1CSL_001 IL_25872.4 | |
| IL_6HCM_358 | 1/A1/1714:1716, 1/A1/1817:1819 | Isolated non-canonical cWW pair | homologous IL_8CRE_470 IL_87907.2 | |
| IL_6HCM_218 | 1/A1/1717:1720, 1/A1/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_6HCM_305 | 1/A1/1717:1722, 1/A1/1812:1816 | No text annotation | ||
| IL_6HCM_219 | 1/A1/1720:1722, 1/A1/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_6HCM_220 | 1/A1/1729:1731, 1/A1/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6HCM_359 | 1/A1/1733:1736, 1/A1/1798:1801 | Double sheared | homologous IL_8CRE_474 IL_09705.15 | |
| IL_6HCM_222 | 1/A1/1739:1741, 1/A1/1793:1795 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_87907.2 | |
| IL_6HCM_223 | 1/A1/1742:1746, 1/A1/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_6HCM_360 | 1/A1/1750:1753, 1/A1/1779:1784 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6HCM_002 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_225 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_226 | No text annotation | ||
| IL_6HCM_004 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6HCM_229 | No text annotation | ||
| IL_6HCM_230 | Isolated non-canonical cWW pair | ||
| IL_6HCM_231 | No text annotation | ||
| IL_6HCM_232 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_017 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_023 | Isolated non-canonical cWW pair | ||
| IL_6HCM_236 | No text annotation | ||
| IL_6HCM_030 | No text annotation | ||
| IL_6HCM_032 | No text annotation | ||
| IL_6HCM_237 | Isolated non-canonical cWW pair | ||
| IL_6HCM_036 | No text annotation | ||
| IL_6HCM_240 | No text annotation | ||
| IL_6HCM_241 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_046 | No text annotation | ||
| IL_6HCM_242 | No text annotation | ||
| IL_6HCM_052 | No text annotation | ||
| IL_6HCM_244 | No text annotation | ||
| IL_6HCM_055 | No text annotation | ||
| IL_6HCM_245 | No text annotation | ||
| IL_6HCM_246 | No text annotation | ||
| IL_6HCM_057 | No text annotation | ||
| IL_6HCM_247 | Partly complementary | ||
| IL_6HCM_059 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_060 | Isolated cWS basepair | ||
| IL_6HCM_248 | No text annotation | ||
| IL_6HCM_071 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_250 | No text annotation | ||
| IL_6HCM_251 | No text annotation | ||
| IL_6HCM_252 | No text annotation | ||
| IL_6HCM_084 | No text annotation | ||
| IL_6HCM_254 | No text annotation | ||
| IL_6HCM_255 | No text annotation | ||
| IL_6HCM_256 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_257 | No text annotation | ||
| IL_6HCM_093 | No text annotation | ||
| IL_6HCM_258 | No text annotation | ||
| IL_6HCM_096 | No text annotation | ||
| IL_6HCM_259 | No text annotation | ||
| IL_6HCM_103 | No text annotation | ||
| IL_6HCM_261 | No text annotation | ||
| IL_6HCM_104 | No text annotation | ||
| IL_6HCM_262 | No text annotation | ||
| IL_6HCM_107 | Isolated non-canonical cWW pair | ||
| IL_6HCM_263 | No text annotation | ||
| IL_6HCM_109 | No text annotation | ||
| IL_6HCM_264 | No text annotation | ||
| IL_6HCM_115 | No text annotation | ||
| IL_6HCM_265 | No text annotation | ||
| IL_6HCM_266 | No text annotation | ||
| IL_6HCM_267 | No text annotation | ||
| IL_6HCM_268 | No text annotation | ||
| IL_6HCM_269 | No text annotation | ||
| IL_6HCM_128 | No text annotation | ||
| IL_6HCM_270 | No text annotation | ||
| IL_6HCM_129 | No text annotation | ||
| IL_6HCM_272 | No text annotation | ||
| IL_6HCM_273 | No text annotation | ||
| IL_6HCM_133 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_134 | Isolated non-canonical cWW with bulges | ||
| IL_6HCM_274 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_275 | No text annotation | ||
| IL_6HCM_276 | No text annotation | ||
| IL_6HCM_277 | No text annotation | ||
| IL_6HCM_278 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_280 | No text annotation | ||
| IL_6HCM_154 | No text annotation | ||
| IL_6HCM_155 | No text annotation | ||
| IL_6HCM_158 | No text annotation | ||
| IL_6HCM_159 | Isolated non-canonical cWW pair | ||
| IL_6HCM_284 | No text annotation | ||
| IL_6HCM_285 | No text annotation | ||
| IL_6HCM_287 | No text annotation | ||
| IL_6HCM_288 | Isolated non-canonical cWW pair | ||
| IL_6HCM_170 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_174 | No text annotation | ||
| IL_6HCM_175 | No text annotation | ||
| IL_6HCM_289 | No text annotation | ||
| IL_6HCM_290 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_291 | No text annotation | ||
| IL_6HCM_292 | No text annotation | ||
| IL_6HCM_293 | No text annotation | ||
| IL_6HCM_191 | No text annotation | ||
| IL_6HCM_296 | No text annotation | ||
| IL_6HCM_196 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6HCM_297 | No text annotation | ||
| IL_6HCM_207 | Other IL | ||
| IL_6HCM_299 | No text annotation | ||
| IL_6HCM_209 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_302 | No text annotation | ||
| IL_6HCM_303 | No text annotation | ||
| IL_6HCM_217 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_304 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_221 | Triple sheared | ||
| IL_6HCM_306 | No text annotation | ||
| IL_6HCM_224 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6HCM_044 | 1/52/111:112, 1/52/278:283, 1/52/304:330 | No text annotation | ||
| J3_6HCM_001 | 1/52/112:116, 1/52/155:160, 1/52/275:278 | No text annotation | ||
| J3_6HCM_045 | 1/52/196:201, 1/52/214:228, 1/52/240:244 | No text annotation | ||
| J3_6HCM_046 | 1/52/380:390, 1/52/401:421, 1/82/13:20 | No text annotation | ||
| J3_6HCM_047 | 1/52/451:455, 1/52/701:705, 1/52/1292:1296 | No text annotation | ||
| J3_6HCM_002 | 1/52/982:986, 1/52/1068:1074, 1/52/1236:1273 | No text annotation | ||
| J3_6HCM_024 | 1/52/982:986, 1/52/1068:1077, 1/52/1233:1273 | No text annotation | ||
| J3_6HCM_048 | 1/52/1099:1108, 1/52/1162:1167, 1/52/1194:1196 | No text annotation | ||
| J3_6HCM_049 | 1/52/1530:1537, 1/52/1622:1624, 1/52/1640:1644 | No text annotation | ||
| J3_6HCM_050 | 1/52/1530:1537, 1/52/1622:1626, 1/52/1636:1644 | No text annotation | ||
| J3_6HCM_004 | 1/52/1545:1548, 1/52/1580:1585, 1/52/1608:1614 | No text annotation | ||
| J3_6HCM_028 | 1/52/1545:1548, 1/52/1580:1589, 1/52/1605:1614 | No text annotation | ||
| J3_6HCM_051 | 1/52/1721:1727, 1/52/1802:1806, 1/52/1832:1841 | No text annotation | ||
| J3_6HCM_052 | 1/52/1950:1977, 1/52/1989:2005, 1/52/2014:2033 | No text annotation | ||
| J3_6HCM_005 | 1/52/2392:2400, 1/52/2804:2808, 1/52/2818:2823 | No text annotation | ||
| J3_6HCM_053 | 1/52/2446:2456, 1/52/2465:2476, 1/52/2501:2514 | No text annotation | ||
| J3_6HCM_054 | 1/52/3936:3946, 1/52/4066:4078, 1/52/4168:4174 | No text annotation | ||
| J3_6HCM_006 | 1/52/4241:4243, 1/52/4267:4269, 1/52/4278:4283 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6HCM_033 | 1/52/4241:4245, 1/52/4263:4269, 1/52/4278:4283 | No text annotation | ||
| J3_6HCM_055 | 1/52/4461:4466, 1/52/4491:4493, 1/52/4507:4515 | No text annotation | ||
| J3_6HCM_007 | 1/52/4462:4466, 1/52/4491:4494, 1/52/4506:4514 | No text annotation | ||
| J3_6HCM_035 | 1/52/4749:4754, 1/52/4879:4883, 1/52/4936:4951 | No text annotation | ||
| J3_6HCM_008 | 1/52/4968:4975, 1/52/4983:4991, 1/52/5060:5065 | No text annotation | ||
| J3_6HCM_056 | 1/72/9:14, 1/72/65:66, 1/72/109:110 | No text annotation | homologous J3_8OI5_025 J3_12003.2 | |
| J3_6HCM_057 | 1/82/44:45, 1/82/58:66, 1/82/92:99 | No text annotation | ||
| J3_6HCM_010 | 1/A1/40:41, 1/A1/481:487, 1/A1/512:514 | No text annotation | homologous J3_8P9A_068 J3_67856.4 | |
| J3_6HCM_011 | 1/A1/681:685, 1/A1/917:922, 1/A1/1022:1024 | No text annotation | ||
| J3_6HCM_012 | 1/A1/938:941, 1/A1/985:993, 1/A1/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6HCM_013 | 1/A1/1091:1096, 1/A1/1136:1140, 1/A1/1147:1158 | No text annotation | ||
| J3_6HCM_039 | 1/A1/1214:1221, 1/A1/1645:1651, 1/A1/1673:1685 | No text annotation | ||
| J3_6HCM_040 | 1/A1/1223:1228, 1/A1/1530:1532, 1/A1/1638:1643 | No text annotation | ||
| J3_6HCM_014 | 1/A1/1225:1228, 1/A1/1530:1532, 1/A1/1638:1641 | No text annotation | homologous J3_4V88_036 NA | |
| J3_6HCM_058 | 1/A1/1237:1244, 1/A1/1255:1266, 1/A1/1516:1520 | No text annotation | homologous J3_8CRE_080 J3_83516.4 | |
| J3_6HCM_016 | 1/A1/1270:1277, 1/A1/1320:1324, 1/A1/1504:1512 | No text annotation | ||
| J3_6HCM_017 | 1/A1/1340:1345, 1/A1/1384:1390, 1/A1/1480:1486 | No text annotation | geometric J3_4LFB_007 J3_08394.3 | |
| J3_6HCM_059 | 1/A1/1340:1363, 1/A1/1375:1389, 1/A1/1481:1486 | No text annotation | ||
| J3_6HCM_018 | 1/A1/1349:1351, 1/A1/1360:1363, 1/A1/1375:1380 | No text annotation | ||
| J3_6HCM_043 | 1/A1/1391:1395, 1/A1/1450:1456, 1/A1/1470:1479 | No text annotation | ||
| J3_6HCM_019 | 1/A1/1532:1536, 1/A1/1597:1604, 1/A1/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
| J4_6HCM_015 | 1/23/7:10, 1/23/25:30, 1/23/40:49, 1/23/65:66 | No text annotation | ||
| J4_6HCM_016 | 1/52/712:713, 1/52/955:961, 1/52/971:982, 1/52/1273:1284 | No text annotation | ||
| J4_6HCM_017 | 1/52/1313:1314, 1/52/1329:1330, 1/52/2356:2357, 1/52/3864:3879 | No text annotation | ||
| J4_6HCM_004 | 1/52/2400:2410, 1/52/2434:2441, 1/52/2781:2791, 1/52/2800:2804 | No text annotation | ||
| J4_6HCM_018 | 1/52/2443:2445, 1/52/2515:2519, 1/52/2536:2539, 1/52/2777:2779 | No text annotation | ||
| J4_6HCM_019 | 1/52/2549:2555, 1/52/2572:2576, 1/52/2585:2593, 1/52/2752:2770 | No text annotation | ||
| J4_6HCM_020 | 1/52/2613:2619, 1/52/2637:2642, 1/52/2692:2698, 1/52/2718:2726 | No text annotation | ||
| J4_6HCM_021 | 1/52/2847:2863, 1/52/2887:2891, 1/52/3610:3626, 1/52/3835:3841 | No text annotation | ||
| J4_6HCM_022 | 1/52/3634:3638, 1/52/3650:3655, 1/52/3689:3694, 1/52/3821:3826 | No text annotation | ||
| J4_6HCM_023 | 1/52/3696:3703, 1/52/3749:3753, 1/52/3771:3792, 1/52/3808:3819 | No text annotation | ||
| J4_6HCM_024 | 1/52/4231:4237, 1/52/4287:4291, 1/52/4318:4319, 1/52/4328:4330 | No text annotation | ||
| J4_6HCM_013 | 1/52/4587:4592, 1/52/4618:4621, 1/52/4676:4678, 1/52/4712:4715 | No text annotation | ||
| J4_6HCM_025 | 1/A1/671:673, 1/A1/1032:1037, 1/A1/1078:1089, 1/A1/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J5_6HCM_006 | 1/52/1335:1340, 1/52/1516:1519, 1/52/1658:1662, 1/52/2287:2309, 1/52/2329:2351 | No text annotation | ||
| J5_6HCM_007 | 1/52/2365:2372, 1/52/2388:2399, 1/52/2805:2807, 1/52/2819:2829, 1/52/3856:3857 | No text annotation | ||
| J5_6HCM_008 | 1/52/3903:3910, 1/52/4392:4408, 1/52/4434:4453, 1/52/4528:4534, 1/52/4552:4557 | No text annotation | ||
| J5_6HCM_009 | 1/A1/30:36, 1/A1/519:527, 1/A1/559:565, 1/A1/585:595, 1/A1/641:644 | No text annotation | ||
| J5_6HCM_005 | 1/A1/123:130, 1/A1/182:185, 1/A1/214:220, 1/A1/302:312, 1/A1/337:341 | No text annotation | ||
| J6_6HCM_004 | 1/52/1352:1355, 1/52/1384:1388, 1/52/1395:1399, 1/52/1418:1429, 1/52/1455:1472, 1/52/1492:1504 | No text annotation | ||
| J6_6HCM_002 | 1/52/2400:2410, 1/52/2434:2445, 1/52/2515:2520, 1/52/2535:2539, 1/52/2777:2791, 1/52/2800:2804 | No text annotation | ||
| J6_6HCM_005 | 1/52/3913:3929, 1/52/4181:4191, 1/52/4204:4205, 1/52/4227:4230, 1/52/4331:4342, 1/52/4370:4389 | No text annotation | ||
| J6_6HCM_006 | 1/52/3915:3929, 1/52/4181:4191, 1/52/4204:4205, 1/52/4227:4230, 1/52/4331:4342, 1/52/4370:4388 | No text annotation | ||
| J7_6HCM_003 | 1/52/1666:1673, 1/52/1682:1686, 1/52/1851:1855, 1/52/1879:1884, 1/52/1895:1899, 1/52/2077:2085, 1/52/2272:2283 | No text annotation | ||
| J7_6HCM_004 | 1/A1/53:62, 1/A1/86:106, 1/A1/355:358, 1/A1/404:409, 1/A1/431:436, 1/A1/457:461, 1/A1/468:474 | No text annotation | ||
| J9_6HCM_001 | 1/52/16:27, 1/52/55:67, 1/52/74:78, 1/52/105:109, 1/52/332:339, 1/82/33:42, 1/82/101:106, 1/82/113:114, 1/82/136:141 | No text annotation | ||
| J9_6HCM_002 | 1/52/3903:3931, 1/52/4179:4191, 1/52/4204:4205, 1/52/4227:4230, 1/52/4331:4342, 1/52/4370:4408, 1/52/4434:4453, 1/52/4528:4534, 1/52/4552:4557 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6HCM_020 | No text annotation | ||
| J3_6HCM_021 | No text annotation | ||
| J3_6HCM_022 | No text annotation | ||
| J3_6HCM_023 | No text annotation | ||
| J3_6HCM_025 | No text annotation | ||
| J3_6HCM_026 | No text annotation | ||
| J3_6HCM_027 | No text annotation | ||
| J3_6HCM_003 | No text annotation | ||
| J3_6HCM_029 | No text annotation | ||
| J3_6HCM_030 | No text annotation | ||
| J3_6HCM_031 | No text annotation | ||
| J3_6HCM_032 | No text annotation | ||
| J3_6HCM_034 | No text annotation | ||
| J3_6HCM_036 | No text annotation | ||
| J3_6HCM_009 | No text annotation | ||
| J3_6HCM_037 | No text annotation | ||
| J3_6HCM_038 | No text annotation | ||
| J3_6HCM_015 | No text annotation | ||
| J3_6HCM_041 | No text annotation | ||
| J3_6HCM_042 | No text annotation | ||
| J4_6HCM_001 | No text annotation | ||
| J4_6HCM_002 | No text annotation | ||
| J4_6HCM_003 | No text annotation | ||
| J4_6HCM_005 | No text annotation | ||
| J4_6HCM_006 | No text annotation | ||
| J4_6HCM_007 | No text annotation | ||
| J4_6HCM_008 | No text annotation | ||
| J4_6HCM_009 | No text annotation | ||
| J4_6HCM_010 | No text annotation | ||
| J4_6HCM_011 | No text annotation | ||
| J4_6HCM_012 | No text annotation | ||
| J4_6HCM_014 | No text annotation | ||
| J5_6HCM_001 | No text annotation | ||
| J5_6HCM_002 | No text annotation | ||
| J5_6HCM_003 | No text annotation | ||
| J5_6HCM_004 | No text annotation | ||
| J6_6HCM_001 | No text annotation | ||
| J6_6HCM_003 | No text annotation | ||
| J7_6HCM_001 | No text annotation | ||
| J7_6HCM_002 | No text annotation |
Coloring options: