6HCM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6HCM_147 | 1/72/79:97 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6HCM_001 | No text annotation | ||
| HL_6HCM_002 | tRNA anticodon loop | ||
| HL_6HCM_003 | T-loop with 2 stacked bulged bases | ||
| HL_6HCM_116 | No text annotation | ||
| HL_6HCM_004 | No text annotation | ||
| HL_6HCM_157 | No text annotation | ||
| HL_6HCM_005 | No text annotation | ||
| HL_6HCM_006 | No text annotation | ||
| HL_6HCM_117 | tRNA D-loop | ||
| HL_6HCM_007 | No text annotation | ||
| HL_6HCM_008 | T-loop with 2 stacked bulged bases | ||
| HL_6HCM_009 | No text annotation | ||
| HL_6HCM_010 | T-loop with unstacked turn | ||
| HL_6HCM_011 | No text annotation | ||
| HL_6HCM_012 | Pseudoknot geometry | ||
| HL_6HCM_013 | GNRA | ||
| HL_6HCM_014 | GNRA | ||
| HL_6HCM_118 | No text annotation | ||
| HL_6HCM_015 | No text annotation | ||
| HL_6HCM_158 | No text annotation | ||
| HL_6HCM_119 | No text annotation | ||
| HL_6HCM_159 | No text annotation | ||
| HL_6HCM_016 | No text annotation | ||
| HL_6HCM_017 | No text annotation | ||
| HL_6HCM_160 | No text annotation | ||
| HL_6HCM_120 | No text annotation | ||
| HL_6HCM_018 | GNRA | ||
| HL_6HCM_019 | No text annotation | ||
| HL_6HCM_161 | T-loop with 2 stacked bulged bases | ||
| HL_6HCM_020 | No text annotation | ||
| HL_6HCM_021 | GNRA | ||
| HL_6HCM_022 | No text annotation | ||
| HL_6HCM_162 | No text annotation | ||
| HL_6HCM_121 | No text annotation | ||
| HL_6HCM_023 | No text annotation | ||
| HL_6HCM_024 | No text annotation | ||
| HL_6HCM_025 | GNRA | ||
| HL_6HCM_122 | No text annotation | ||
| HL_6HCM_163 | No text annotation | ||
| HL_6HCM_026 | No text annotation | ||
| HL_6HCM_123 | No text annotation | ||
| HL_6HCM_027 | No text annotation | ||
| HL_6HCM_028 | No text annotation | ||
| HL_6HCM_029 | No text annotation | ||
| HL_6HCM_124 | No text annotation | ||
| HL_6HCM_164 | No text annotation | ||
| HL_6HCM_125 | No text annotation | ||
| HL_6HCM_030 | No text annotation | ||
| HL_6HCM_031 | GNRA | ||
| HL_6HCM_126 | No text annotation | ||
| HL_6HCM_032 | No text annotation | ||
| HL_6HCM_033 | No text annotation | ||
| HL_6HCM_034 | No text annotation | ||
| HL_6HCM_165 | GNRA wlth tandem sheared | ||
| HL_6HCM_035 | No text annotation | ||
| HL_6HCM_036 | GNRA | ||
| HL_6HCM_037 | No text annotation | ||
| HL_6HCM_127 | T-loop with 2 stacked bulged bases | ||
| HL_6HCM_038 | No text annotation | ||
| HL_6HCM_166 | Pseudoknot geometry with 3' bulge | ||
| HL_6HCM_039 | GNRA variation | ||
| HL_6HCM_128 | No text annotation | ||
| HL_6HCM_040 | No text annotation | ||
| HL_6HCM_129 | No text annotation | ||
| HL_6HCM_041 | No text annotation | ||
| HL_6HCM_167 | No text annotation | ||
| HL_6HCM_042 | GNRA | ||
| HL_6HCM_043 | No text annotation | ||
| HL_6HCM_130 | No text annotation | ||
| HL_6HCM_044 | No text annotation | ||
| HL_6HCM_168 | No text annotation | ||
| HL_6HCM_045 | No text annotation | ||
| HL_6HCM_131 | No text annotation | ||
| HL_6HCM_046 | No text annotation | ||
| HL_6HCM_047 | No text annotation | ||
| HL_6HCM_132 | tRNA D-loop | ||
| HL_6HCM_048 | No text annotation | ||
| HL_6HCM_049 | GNRA | ||
| HL_6HCM_050 | UNCG | ||
| HL_6HCM_051 | No text annotation | ||
| HL_6HCM_169 | No text annotation | ||
| HL_6HCM_052 | No text annotation | ||
| HL_6HCM_053 | No text annotation | ||
| HL_6HCM_170 | No text annotation | ||
| HL_6HCM_133 | tRNA D-loop | ||
| HL_6HCM_054 | GNRA | ||
| HL_6HCM_055 | No text annotation | ||
| HL_6HCM_171 | GNRA | ||
| HL_6HCM_134 | No text annotation | ||
| HL_6HCM_056 | No text annotation | ||
| HL_6HCM_135 | No text annotation | ||
| HL_6HCM_057 | No text annotation | ||
| HL_6HCM_172 | No text annotation | ||
| HL_6HCM_058 | No text annotation | ||
| HL_6HCM_059 | No text annotation | ||
| HL_6HCM_136 | No text annotation | ||
| HL_6HCM_137 | No text annotation | ||
| HL_6HCM_060 | No text annotation | ||
| HL_6HCM_138 | No text annotation | ||
| HL_6HCM_061 | No text annotation | ||
| HL_6HCM_062 | No text annotation | ||
| HL_6HCM_139 | tRNA anticodon loop | ||
| HL_6HCM_063 | Pseudoknot geometry | ||
| HL_6HCM_064 | No text annotation | ||
| HL_6HCM_140 | No text annotation | ||
| HL_6HCM_065 | GNRA with extra cWW | ||
| HL_6HCM_173 | GNRA | ||
| HL_6HCM_141 | No text annotation | ||
| HL_6HCM_066 | No text annotation | ||
| HL_6HCM_142 | No text annotation | ||
| HL_6HCM_067 | No text annotation | ||
| HL_6HCM_143 | No text annotation | ||
| HL_6HCM_068 | No text annotation | ||
| HL_6HCM_144 | No text annotation | ||
| HL_6HCM_069 | No text annotation | ||
| HL_6HCM_070 | GNRA | ||
| HL_6HCM_071 | GNRA | ||
| HL_6HCM_072 | Ribsomal LSU H95 | ||
| HL_6HCM_145 | No text annotation | ||
| HL_6HCM_174 | No text annotation | ||
| HL_6HCM_073 | No text annotation | ||
| HL_6HCM_074 | tRNA D-loop | ||
| HL_6HCM_075 | No text annotation | ||
| HL_6HCM_076 | No text annotation | ||
| HL_6HCM_077 | No text annotation | ||
| HL_6HCM_146 | No text annotation | ||
| HL_6HCM_175 | No text annotation | ||
| HL_6HCM_078 | No text annotation | ||
| HL_6HCM_079 | GNRA | ||
| HL_6HCM_080 | No text annotation | ||
| HL_6HCM_081 | No text annotation | ||
| HL_6HCM_082 | No text annotation | ||
| HL_6HCM_148 | No text annotation | ||
| HL_6HCM_083 | No text annotation | ||
| HL_6HCM_084 | No text annotation | ||
| HL_6HCM_085 | No text annotation | ||
| HL_6HCM_086 | GNRA related | ||
| HL_6HCM_087 | GNRA | ||
| HL_6HCM_088 | T-loop with 1 bulged base | ||
| HL_6HCM_089 | No text annotation | ||
| HL_6HCM_090 | No text annotation | ||
| HL_6HCM_091 | No text annotation | ||
| HL_6HCM_176 | No text annotation | ||
| HL_6HCM_092 | UNCG | ||
| HL_6HCM_093 | No text annotation | ||
| HL_6HCM_149 | No text annotation | ||
| HL_6HCM_177 | No text annotation | ||
| HL_6HCM_094 | No text annotation | ||
| HL_6HCM_150 | No text annotation | ||
| HL_6HCM_095 | No text annotation | ||
| HL_6HCM_096 | GNRA variation | ||
| HL_6HCM_097 | No text annotation | ||
| HL_6HCM_098 | No text annotation | ||
| HL_6HCM_178 | No text annotation | ||
| HL_6HCM_099 | No text annotation | ||
| HL_6HCM_100 | GNRA with extra cWW | ||
| HL_6HCM_151 | No text annotation | ||
| HL_6HCM_101 | No text annotation | ||
| HL_6HCM_102 | No text annotation | ||
| HL_6HCM_152 | No text annotation | ||
| HL_6HCM_153 | GNRA with extra near cWW | ||
| HL_6HCM_103 | GNRA | ||
| HL_6HCM_104 | GNRA | ||
| HL_6HCM_105 | No text annotation | ||
| HL_6HCM_154 | No text annotation | ||
| HL_6HCM_106 | No text annotation | ||
| HL_6HCM_179 | GNRA wlth extra near cWW | ||
| HL_6HCM_107 | GNRA | ||
| HL_6HCM_155 | No text annotation | ||
| HL_6HCM_108 | No text annotation | ||
| HL_6HCM_109 | No text annotation | ||
| HL_6HCM_110 | GNRA | ||
| HL_6HCM_111 | GNRA | ||
| HL_6HCM_156 | No text annotation | ||
| HL_6HCM_112 | No text annotation | ||
| HL_6HCM_113 | No text annotation | ||
| HL_6HCM_114 | No text annotation | ||
| HL_6HCM_115 | GNRA variation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6HCM_010 | 1/52/339:342, 1/82/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_6HCM_143 | 1/72/79:85, 1/72/92:97 | No text annotation | geometric IL_6O5F_001 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6HCM_001 | No text annotation | ||
| IL_6HCM_002 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_225 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_307 | Single bulged C | ||
| IL_6HCM_003 | Single bulged U | ||
| IL_6HCM_308 | tSH-tHW-tHH-tHS | ||
| IL_6HCM_226 | No text annotation | ||
| IL_6HCM_309 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6HCM_004 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6HCM_005 | Multiple bulged bases | ||
| IL_6HCM_227 | No text annotation | ||
| IL_6HCM_006 | No text annotation | ||
| IL_6HCM_228 | No text annotation | ||
| IL_6HCM_007 | Isolated non-canonical cWW pair | ||
| IL_6HCM_229 | No text annotation | ||
| IL_6HCM_310 | No text annotation | ||
| IL_6HCM_008 | No text annotation | ||
| IL_6HCM_230 | Isolated non-canonical cWW pair | ||
| IL_6HCM_009 | No text annotation | ||
| IL_6HCM_311 | No text annotation | ||
| IL_6HCM_011 | Single bulged A | ||
| IL_6HCM_012 | No text annotation | ||
| IL_6HCM_013 | Triple sheared with non-canonical cWW | ||
| IL_6HCM_231 | No text annotation | ||
| IL_6HCM_312 | No text annotation | ||
| IL_6HCM_014 | No text annotation | ||
| IL_6HCM_015 | Isolated non-canonical cWW pair | ||
| IL_6HCM_016 | No text annotation | ||
| IL_6HCM_232 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_313 | Isolated non-canonical cWW pair | ||
| IL_6HCM_017 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_018 | No text annotation | ||
| IL_6HCM_019 | Single bulged C | ||
| IL_6HCM_020 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_233 | No text annotation | ||
| IL_6HCM_021 | Multiple bulged bases | ||
| IL_6HCM_022 | No text annotation | ||
| IL_6HCM_314 | No text annotation | ||
| IL_6HCM_023 | Isolated non-canonical cWW pair | ||
| IL_6HCM_024 | Single bulged A | ||
| IL_6HCM_234 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_025 | Single bulged G | ||
| IL_6HCM_026 | No text annotation | ||
| IL_6HCM_027 | No text annotation | ||
| IL_6HCM_235 | No text annotation | ||
| IL_6HCM_028 | No text annotation | ||
| IL_6HCM_029 | No text annotation | ||
| IL_6HCM_236 | No text annotation | ||
| IL_6HCM_030 | No text annotation | ||
| IL_6HCM_315 | No text annotation | ||
| IL_6HCM_031 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_316 | No text annotation | ||
| IL_6HCM_032 | No text annotation | ||
| IL_6HCM_033 | Isolated near basepair | ||
| IL_6HCM_034 | No text annotation | ||
| IL_6HCM_237 | Isolated non-canonical cWW pair | ||
| IL_6HCM_035 | Single stack bend | ||
| IL_6HCM_317 | No text annotation | ||
| IL_6HCM_036 | No text annotation | ||
| IL_6HCM_037 | No text annotation | ||
| IL_6HCM_238 | No text annotation | ||
| IL_6HCM_038 | Major groove intercalation | ||
| IL_6HCM_039 | No text annotation | ||
| IL_6HCM_040 | Double sheared with non-canonical cWW | ||
| IL_6HCM_041 | No text annotation | ||
| IL_6HCM_042 | No text annotation | ||
| IL_6HCM_239 | No text annotation | ||
| IL_6HCM_043 | Isolated non-canonical cWW pair | ||
| IL_6HCM_044 | tHW-tHW cross-strand stack | ||
| IL_6HCM_240 | No text annotation | ||
| IL_6HCM_318 | No text annotation | ||
| IL_6HCM_241 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_045 | Single bulged G | ||
| IL_6HCM_319 | Triple sheared | ||
| IL_6HCM_046 | No text annotation | ||
| IL_6HCM_242 | No text annotation | ||
| IL_6HCM_047 | No text annotation | ||
| IL_6HCM_048 | Single bulged U | ||
| IL_6HCM_049 | No text annotation | ||
| IL_6HCM_050 | Isolated non-canonical cWW pair | ||
| IL_6HCM_051 | No text annotation | ||
| IL_6HCM_052 | No text annotation | ||
| IL_6HCM_320 | No text annotation | ||
| IL_6HCM_053 | Single bulged G | ||
| IL_6HCM_243 | No text annotation | ||
| IL_6HCM_054 | No text annotation | ||
| IL_6HCM_244 | No text annotation | ||
| IL_6HCM_055 | No text annotation | ||
| IL_6HCM_321 | C-loop with bulged stacked A's | ||
| IL_6HCM_056 | No text annotation | ||
| IL_6HCM_245 | No text annotation | ||
| IL_6HCM_246 | No text annotation | ||
| IL_6HCM_057 | No text annotation | ||
| IL_6HCM_322 | Major groove minor groove platform; mini C-loop | ||
| IL_6HCM_058 | Single bulged G | ||
| IL_6HCM_247 | Partly complementary | ||
| IL_6HCM_323 | Isolated non-canonical cWW pair | ||
| IL_6HCM_059 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_060 | Isolated cWS basepair | ||
| IL_6HCM_061 | UAA/GAN | ||
| IL_6HCM_248 | No text annotation | ||
| IL_6HCM_062 | Isolated non-canonical cWW pair | ||
| IL_6HCM_063 | Single bulged C | ||
| IL_6HCM_064 | No text annotation | ||
| IL_6HCM_065 | No text annotation | ||
| IL_6HCM_066 | Single bulged U | ||
| IL_6HCM_249 | No text annotation | ||
| IL_6HCM_067 | Major groove platform with extra cWW | ||
| IL_6HCM_068 | Single bulged U | ||
| IL_6HCM_069 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_070 | Kink-turn | ||
| IL_6HCM_071 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_250 | No text annotation | ||
| IL_6HCM_324 | Isolated non-canonical cWW pair | ||
| IL_6HCM_072 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6HCM_251 | No text annotation | ||
| IL_6HCM_073 | C-loop | ||
| IL_6HCM_074 | UAA/GAN | ||
| IL_6HCM_075 | Single stack bend | ||
| IL_6HCM_076 | Single stack bend | ||
| IL_6HCM_077 | No text annotation | ||
| IL_6HCM_252 | No text annotation | ||
| IL_6HCM_325 | No text annotation | ||
| IL_6HCM_078 | Single bulged C | ||
| IL_6HCM_079 | Single stack bend | ||
| IL_6HCM_080 | Decoding loop related | ||
| IL_6HCM_081 | Single bulged G | ||
| IL_6HCM_253 | No text annotation | ||
| IL_6HCM_082 | Kink-turn | ||
| IL_6HCM_083 | No text annotation | ||
| IL_6HCM_084 | No text annotation | ||
| IL_6HCM_254 | No text annotation | ||
| IL_6HCM_326 | No text annotation | ||
| IL_6HCM_255 | No text annotation | ||
| IL_6HCM_085 | No text annotation | ||
| IL_6HCM_086 | Single stack bend | ||
| IL_6HCM_087 | tSH-tSH-tHH-tHS | ||
| IL_6HCM_088 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_089 | No text annotation | ||
| IL_6HCM_256 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_327 | Isolated non-canonical cWW pair | ||
| IL_6HCM_090 | Single bulged A | ||
| IL_6HCM_257 | No text annotation | ||
| IL_6HCM_091 | Kink-turn related | ||
| IL_6HCM_092 | Major groove intercalation | ||
| IL_6HCM_093 | No text annotation | ||
| IL_6HCM_328 | No text annotation | ||
| IL_6HCM_094 | Single stack bend | ||
| IL_6HCM_329 | No text annotation | ||
| IL_6HCM_258 | No text annotation | ||
| IL_6HCM_095 | No text annotation | ||
| IL_6HCM_096 | No text annotation | ||
| IL_6HCM_259 | No text annotation | ||
| IL_6HCM_330 | No text annotation | ||
| IL_6HCM_097 | No text annotation | ||
| IL_6HCM_098 | Single bulged U | ||
| IL_6HCM_099 | No text annotation | ||
| IL_6HCM_100 | No text annotation | ||
| IL_6HCM_260 | No text annotation | ||
| IL_6HCM_101 | Isolated near basepair | ||
| IL_6HCM_102 | Isolated non-canonical cWW pair | ||
| IL_6HCM_103 | No text annotation | ||
| IL_6HCM_261 | No text annotation | ||
| IL_6HCM_331 | No text annotation | ||
| IL_6HCM_332 | No text annotation | ||
| IL_6HCM_104 | No text annotation | ||
| IL_6HCM_262 | No text annotation | ||
| IL_6HCM_333 | No text annotation | ||
| IL_6HCM_105 | Single bulged A | ||
| IL_6HCM_106 | Isolated tHS basepair with bulges | ||
| IL_6HCM_334 | Single bulged A | ||
| IL_6HCM_107 | Isolated non-canonical cWW pair | ||
| IL_6HCM_263 | No text annotation | ||
| IL_6HCM_108 | Single stack bend | ||
| IL_6HCM_335 | Single stack bend | ||
| IL_6HCM_109 | No text annotation | ||
| IL_6HCM_110 | No text annotation | ||
| IL_6HCM_111 | No text annotation | ||
| IL_6HCM_112 | No text annotation | ||
| IL_6HCM_113 | Major groove platform | ||
| IL_6HCM_114 | Isolated non-canonical cWW with bulges | ||
| IL_6HCM_336 | No text annotation | ||
| IL_6HCM_264 | No text annotation | ||
| IL_6HCM_115 | No text annotation | ||
| IL_6HCM_116 | No text annotation | ||
| IL_6HCM_117 | Isolated non-canonical cWW pair | ||
| IL_6HCM_337 | No text annotation | ||
| IL_6HCM_265 | No text annotation | ||
| IL_6HCM_118 | Single bulged A | ||
| IL_6HCM_119 | Single stack bend | ||
| IL_6HCM_120 | No text annotation | ||
| IL_6HCM_338 | No text annotation | ||
| IL_6HCM_266 | No text annotation | ||
| IL_6HCM_121 | Double sheared | ||
| IL_6HCM_122 | Isolated non-canonical cWW pair | ||
| IL_6HCM_267 | No text annotation | ||
| IL_6HCM_123 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6HCM_268 | No text annotation | ||
| IL_6HCM_124 | No text annotation | ||
| IL_6HCM_339 | No text annotation | ||
| IL_6HCM_125 | UAA/GAN related | ||
| IL_6HCM_126 | No text annotation | ||
| IL_6HCM_269 | No text annotation | ||
| IL_6HCM_340 | No text annotation | ||
| IL_6HCM_127 | No text annotation | ||
| IL_6HCM_128 | No text annotation | ||
| IL_6HCM_341 | No text annotation | ||
| IL_6HCM_342 | No text annotation | ||
| IL_6HCM_270 | No text annotation | ||
| IL_6HCM_271 | No text annotation | ||
| IL_6HCM_129 | No text annotation | ||
| IL_6HCM_130 | Triple non-canonical cWW pairs | ||
| IL_6HCM_131 | No text annotation | ||
| IL_6HCM_132 | No text annotation | ||
| IL_6HCM_272 | No text annotation | ||
| IL_6HCM_343 | No text annotation | ||
| IL_6HCM_273 | No text annotation | ||
| IL_6HCM_344 | No text annotation | ||
| IL_6HCM_133 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_345 | Isolated non-canonical cWW pair | ||
| IL_6HCM_346 | No text annotation | ||
| IL_6HCM_134 | Isolated non-canonical cWW with bulges | ||
| IL_6HCM_274 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_275 | No text annotation | ||
| IL_6HCM_135 | No text annotation | ||
| IL_6HCM_347 | No text annotation | ||
| IL_6HCM_136 | No text annotation | ||
| IL_6HCM_137 | No text annotation | ||
| IL_6HCM_138 | Single bulged A | ||
| IL_6HCM_139 | Minor groove platform related | ||
| IL_6HCM_348 | No text annotation | ||
| IL_6HCM_276 | No text annotation | ||
| IL_6HCM_140 | No text annotation | ||
| IL_6HCM_141 | Symmetric double minor groove platform | ||
| IL_6HCM_277 | No text annotation | ||
| IL_6HCM_142 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6HCM_278 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_144 | Isolated non-canonical cWW pair | ||
| IL_6HCM_145 | Isolated non-canonical cWW pair | ||
| IL_6HCM_146 | Double sheared | ||
| IL_6HCM_147 | No text annotation | ||
| IL_6HCM_148 | Minor groove platform | ||
| IL_6HCM_149 | No text annotation | ||
| IL_6HCM_150 | No text annotation | ||
| IL_6HCM_151 | Isolated non-canonical cWW pair | ||
| IL_6HCM_279 | No text annotation | ||
| IL_6HCM_152 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_153 | No text annotation | ||
| IL_6HCM_280 | No text annotation | ||
| IL_6HCM_154 | No text annotation | ||
| IL_6HCM_281 | Single stack bend | ||
| IL_6HCM_155 | No text annotation | ||
| IL_6HCM_282 | No text annotation | ||
| IL_6HCM_156 | Isolated non-canonical cWW contact | ||
| IL_6HCM_157 | Double sheared with non-canonical cWW | ||
| IL_6HCM_283 | Single stack bend | ||
| IL_6HCM_158 | No text annotation | ||
| IL_6HCM_349 | Single bulged A | ||
| IL_6HCM_159 | Isolated non-canonical cWW pair | ||
| IL_6HCM_160 | No text annotation | ||
| IL_6HCM_161 | No text annotation | ||
| IL_6HCM_284 | No text annotation | ||
| IL_6HCM_162 | Kink-turn with non-sequential stacking | ||
| IL_6HCM_285 | No text annotation | ||
| IL_6HCM_163 | No text annotation | ||
| IL_6HCM_286 | No text annotation | ||
| IL_6HCM_164 | No text annotation | ||
| IL_6HCM_165 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_166 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_167 | Single bulged U | ||
| IL_6HCM_287 | No text annotation | ||
| IL_6HCM_168 | C-loop with extra cWW pair | ||
| IL_6HCM_169 | Single stack bend | ||
| IL_6HCM_288 | Isolated non-canonical cWW pair | ||
| IL_6HCM_170 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_350 | Single bulged A | ||
| IL_6HCM_171 | No text annotation | ||
| IL_6HCM_172 | No text annotation | ||
| IL_6HCM_173 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_174 | No text annotation | ||
| IL_6HCM_351 | No text annotation | ||
| IL_6HCM_175 | No text annotation | ||
| IL_6HCM_289 | No text annotation | ||
| IL_6HCM_352 | No text annotation | ||
| IL_6HCM_176 | No text annotation | ||
| IL_6HCM_177 | Isolated non-canonical cWW pair | ||
| IL_6HCM_290 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_178 | tSH-tHW-tHS | ||
| IL_6HCM_179 | Isolated non-canonical cWW pair | ||
| IL_6HCM_291 | No text annotation | ||
| IL_6HCM_180 | Single stack bend | ||
| IL_6HCM_181 | Major groove minor groove platform; mini C-loop | ||
| IL_6HCM_292 | No text annotation | ||
| IL_6HCM_182 | Isolated non-canonical cWW pair | ||
| IL_6HCM_183 | No text annotation | ||
| IL_6HCM_293 | No text annotation | ||
| IL_6HCM_184 | No text annotation | ||
| IL_6HCM_185 | Isolated cWH basepair | ||
| IL_6HCM_186 | Major groove platform; stack outside cWW | ||
| IL_6HCM_294 | No text annotation | ||
| IL_6HCM_187 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_188 | No text annotation | ||
| IL_6HCM_295 | No text annotation | ||
| IL_6HCM_189 | Triple non-canonical cWW pairs | ||
| IL_6HCM_190 | Kink-turn | ||
| IL_6HCM_191 | No text annotation | ||
| IL_6HCM_353 | No text annotation | ||
| IL_6HCM_192 | tSH-tHW-tHS | ||
| IL_6HCM_193 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_194 | Isolated cWH basepair | ||
| IL_6HCM_296 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_195 | Minor groove platform | ||
| IL_6HCM_196 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6HCM_354 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6HCM_197 | Single bulged G | ||
| IL_6HCM_198 | Isolated non-canonical cWW pair | ||
| IL_6HCM_199 | Minor groove platform | ||
| IL_6HCM_297 | No text annotation | ||
| IL_6HCM_355 | No text annotation | ||
| IL_6HCM_200 | No text annotation | ||
| IL_6HCM_201 | Single bulged U | ||
| IL_6HCM_202 | Isolated cWS basepair | ||
| IL_6HCM_298 | No text annotation | ||
| IL_6HCM_203 | Minor groove platform with extra cWW | ||
| IL_6HCM_204 | Single bulged A | ||
| IL_6HCM_205 | Isolated cWH basepair | ||
| IL_6HCM_206 | Minor groove platform | ||
| IL_6HCM_356 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_207 | Other IL | ||
| IL_6HCM_208 | Minor groove platform | ||
| IL_6HCM_299 | No text annotation | ||
| IL_6HCM_209 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_300 | Isolated non-canonical cWW pair | ||
| IL_6HCM_301 | No text annotation | ||
| IL_6HCM_210 | No text annotation | ||
| IL_6HCM_211 | Isolated non-canonical cWW pair | ||
| IL_6HCM_212 | No text annotation | ||
| IL_6HCM_213 | No text annotation | ||
| IL_6HCM_214 | No text annotation | ||
| IL_6HCM_302 | No text annotation | ||
| IL_6HCM_215 | Isolated non-canonical cWW pair | ||
| IL_6HCM_357 | No text annotation | ||
| IL_6HCM_303 | No text annotation | ||
| IL_6HCM_216 | No text annotation | ||
| IL_6HCM_217 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_358 | Isolated non-canonical cWW pair | ||
| IL_6HCM_304 | Tandem non-canonical cWW pairs | ||
| IL_6HCM_218 | Double sheared | ||
| IL_6HCM_305 | No text annotation | ||
| IL_6HCM_219 | Single bulged U | ||
| IL_6HCM_220 | Isolated non-canonical cWW pair | ||
| IL_6HCM_221 | Double sheared with near cWW | ||
| IL_6HCM_359 | Double sheared | ||
| IL_6HCM_222 | Isolated non-canonical cWW pair | ||
| IL_6HCM_223 | Triple sheared | ||
| IL_6HCM_306 | No text annotation | ||
| IL_6HCM_360 | No text annotation | ||
| IL_6HCM_224 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_6HCM_025 | 1/A1/671:673, 1/A1/1032:1037, 1/A1/1078:1089, 1/A1/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_14595.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6HCM_020 | No text annotation | ||
| J3_6HCM_044 | No text annotation | ||
| J3_6HCM_001 | No text annotation | ||
| J3_6HCM_045 | No text annotation | ||
| J3_6HCM_021 | No text annotation | ||
| J3_6HCM_022 | No text annotation | ||
| J3_6HCM_046 | No text annotation | ||
| J3_6HCM_047 | No text annotation | ||
| J3_6HCM_023 | No text annotation | ||
| J3_6HCM_002 | No text annotation | ||
| J3_6HCM_024 | No text annotation | ||
| J3_6HCM_025 | No text annotation | ||
| J3_6HCM_048 | No text annotation | ||
| J3_6HCM_026 | No text annotation | ||
| J3_6HCM_027 | No text annotation | ||
| J3_6HCM_003 | No text annotation | ||
| J3_6HCM_049 | No text annotation | ||
| J3_6HCM_050 | No text annotation | ||
| J3_6HCM_004 | No text annotation | ||
| J3_6HCM_028 | No text annotation | ||
| J3_6HCM_051 | No text annotation | ||
| J3_6HCM_029 | No text annotation | ||
| J3_6HCM_030 | No text annotation | ||
| J3_6HCM_052 | No text annotation | ||
| J3_6HCM_005 | No text annotation | ||
| J3_6HCM_053 | No text annotation | ||
| J3_6HCM_031 | No text annotation | ||
| J3_6HCM_032 | No text annotation | ||
| J3_6HCM_054 | No text annotation | ||
| J3_6HCM_006 | No text annotation | ||
| J3_6HCM_033 | No text annotation | ||
| J3_6HCM_055 | No text annotation | ||
| J3_6HCM_034 | No text annotation | ||
| J3_6HCM_007 | No text annotation | ||
| J3_6HCM_035 | No text annotation | ||
| J3_6HCM_008 | No text annotation | ||
| J3_6HCM_056 | No text annotation | ||
| J3_6HCM_036 | No text annotation | ||
| J3_6HCM_009 | No text annotation | ||
| J3_6HCM_037 | No text annotation | ||
| J3_6HCM_057 | No text annotation | ||
| J3_6HCM_010 | No text annotation | ||
| J3_6HCM_011 | No text annotation | ||
| J3_6HCM_012 | No text annotation | ||
| J3_6HCM_038 | No text annotation | ||
| J3_6HCM_013 | No text annotation | ||
| J3_6HCM_039 | No text annotation | ||
| J3_6HCM_040 | No text annotation | ||
| J3_6HCM_014 | No text annotation | ||
| J3_6HCM_015 | No text annotation | ||
| J3_6HCM_041 | No text annotation | ||
| J3_6HCM_058 | No text annotation | ||
| J3_6HCM_016 | No text annotation | ||
| J3_6HCM_042 | No text annotation | ||
| J3_6HCM_017 | No text annotation | ||
| J3_6HCM_059 | No text annotation | ||
| J3_6HCM_018 | No text annotation | ||
| J3_6HCM_043 | No text annotation | ||
| J3_6HCM_019 | No text annotation | ||
| J4_6HCM_015 | No text annotation | ||
| J4_6HCM_001 | No text annotation | ||
| J4_6HCM_002 | No text annotation | ||
| J4_6HCM_016 | No text annotation | ||
| J4_6HCM_017 | No text annotation | ||
| J4_6HCM_003 | No text annotation | ||
| J4_6HCM_004 | No text annotation | ||
| J4_6HCM_005 | No text annotation | ||
| J4_6HCM_018 | No text annotation | ||
| J4_6HCM_006 | No text annotation | ||
| J4_6HCM_019 | No text annotation | ||
| J4_6HCM_020 | No text annotation | ||
| J4_6HCM_007 | No text annotation | ||
| J4_6HCM_008 | No text annotation | ||
| J4_6HCM_009 | No text annotation | ||
| J4_6HCM_021 | No text annotation | ||
| J4_6HCM_022 | No text annotation | ||
| J4_6HCM_010 | No text annotation | ||
| J4_6HCM_011 | No text annotation | ||
| J4_6HCM_023 | No text annotation | ||
| J4_6HCM_012 | No text annotation | ||
| J4_6HCM_024 | No text annotation | ||
| J4_6HCM_013 | No text annotation | ||
| J4_6HCM_014 | No text annotation | ||
| J5_6HCM_001 | No text annotation | ||
| J5_6HCM_006 | No text annotation | ||
| J5_6HCM_007 | No text annotation | ||
| J5_6HCM_002 | No text annotation | ||
| J5_6HCM_008 | No text annotation | ||
| J5_6HCM_003 | No text annotation | ||
| J5_6HCM_009 | No text annotation | ||
| J5_6HCM_004 | No text annotation | ||
| J5_6HCM_005 | No text annotation | ||
| J6_6HCM_004 | No text annotation | ||
| J6_6HCM_001 | No text annotation | ||
| J6_6HCM_002 | No text annotation | ||
| J6_6HCM_005 | No text annotation | ||
| J6_6HCM_006 | No text annotation | ||
| J6_6HCM_003 | No text annotation | ||
| J7_6HCM_003 | No text annotation | ||
| J7_6HCM_001 | No text annotation | ||
| J7_6HCM_002 | No text annotation | ||
| J7_6HCM_004 | No text annotation | ||
| J9_6HCM_001 | No text annotation | ||
| J9_6HCM_002 | No text annotation |
Coloring options: