HL_6HCM_035

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG

Length

40 nucleotides

Bulged bases

6HCM|1|52|C|2094, 6HCM|1|52|C|2099, 6HCM|1|52|G|2100, 6HCM|1|52|A|2101, 6HCM|1|52|U|2267, 6HCM|1|52|C|2269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|C|2087
6HCM|1|52|A|2088
6HCM|1|52|G|2089
6HCM|1|52|U|2090
6HCM|1|52|C|2091
6HCM|1|52|G|2092
6HCM|1|52|G|2093
6HCM|1|52|C|2094
6HCM|1|52|A|2095
6HCM|1|52|G|2096
6HCM|1|52|A|2097
6HCM|1|52|G|2098
6HCM|1|52|C|2099
6HCM|1|52|G|2100
6HCM|1|52|A|2101
6HCM|1|52|G|2102
6HCM|1|52|A|2103
6HCM|1|52|A|2104
6HCM|1|52|A|2105
6HCM|1|52|G|2106
6HCM|1|52|A|2107
6HCM|1|52|G|2108
6HCM|1|52|A|2109
6HCM|1|52|G|2110
6HCM|1|52|U|2111
6HCM|1|52|G|2112
6HCM|1|52|G|2113
6HCM|1|52|C|2258
6HCM|1|52|G|2259
6HCM|1|52|C|2260
6HCM|1|52|G|2261
6HCM|1|52|G|2262
6HCM|1|52|A|2263
6HCM|1|52|C|2264
6HCM|1|52|G|2265
6HCM|1|52|C|2266
6HCM|1|52|U|2267
6HCM|1|52|A|2268
6HCM|1|52|C|2269
6HCM|1|52|G|2270

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain E3

60S ribosomal protein L6

Chain F3

uL30

Chain Q3

eL18

Chain b3

eL29

Chain e3

eL32

Chain r3

eL28