HL_6HCM_050

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6HCM|1|52|U|2874

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_050 not in the Motif Atlas

Geometric match to HL_4PMI_004

Geometric discrepancy: 0.2343

The information below is about HL_4PMI_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6HCM|1|52|C|2872
6HCM|1|52|U|2873
6HCM|1|52|U|2874
6HCM|1|52|C|2875
6HCM|1|52|G|2876
6HCM|1|52|G|2877

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain n3

eL41

Chain p3

eL43