HL_6HCM_055

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GAAGAAAUUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_055 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.2768

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6HCM|1|52|G|3722
6HCM|1|52|A|3723
6HCM|1|52|A|3724
6HCM|1|52|G|3725
6HCM|1|52|A|3726
6HCM|1|52|A|3727
6HCM|1|52|A|3728
6HCM|1|52|U|3729
6HCM|1|52|U|3730
6HCM|1|52|C|3731

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain i3

60S ribosomal protein L36

Chain o3

eL42

Chain u3

Ribosomal protein