3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
UUUGGGUUUUA
Length
11 nucleotides
Bulged bases
6HCM|1|52|U|4354
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6HCM_066 not in the Motif Atlas
Geometric match to HL_2ZZM_002
Geometric discrepancy: 0.3244
The information below is about HL_2ZZM_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

6HCM|1|52|U|4352
6HCM|1|52|U|4353
6HCM|1|52|U|4354
6HCM|1|52|G|4355
6HCM|1|52|G|4356
6HCM|1|52|G|4357
6HCM|1|52|U|4358
6HCM|1|52|U|4359
6HCM|1|52|U|4360
6HCM|1|52|U|4361
6HCM|1|52|A|4362

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain L3
eL13
Chain a3
uL15
Chain i3
60S ribosomal protein L36
Chain o3
eL42

Coloring options:


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