HL_6HCM_066

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UUUGGGUUUUA

Length

11 nucleotides

Bulged bases

6HCM|1|52|U|4354

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_066 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3244

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6HCM|1|52|U|4352
6HCM|1|52|U|4353
6HCM|1|52|U|4354
6HCM|1|52|G|4355
6HCM|1|52|G|4356
6HCM|1|52|G|4357
6HCM|1|52|U|4358
6HCM|1|52|U|4359
6HCM|1|52|U|4360
6HCM|1|52|U|4361
6HCM|1|52|A|4362

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain a3

uL15

Chain i3

60S ribosomal protein L36

Chain o3

eL42