HL_6HCM_073

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6HCM|1|52|G|4694, 6HCM|1|52|C|4698

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_073 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.145

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6HCM|1|52|C|4688
6HCM|1|52|U|4689
6HCM|1|52|G|4690
6HCM|1|52|A|4691
6HCM|1|52|A|4692
6HCM|1|52|C|4693
6HCM|1|52|G|4694
6HCM|1|52|C|4695
6HCM|1|52|C|4696
6HCM|1|52|U|4697
6HCM|1|52|C|4698
6HCM|1|52|U|4699
6HCM|1|52|A|4700
6HCM|1|52|A|4701
6HCM|1|52|G|4702

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain H3

uL6

Chain O3

uL13

Chain m3

eL40