HL_6HCM_076

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6HCM|1|52|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_076 not in the Motif Atlas

Homologous match to HL_5TBW_070

Geometric discrepancy: 0.2576

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6HCM|1|52|G|4975
6HCM|1|52|U|4976
6HCM|1|52|A|4977
6HCM|1|52|G|4978
6HCM|1|52|A|4979
6HCM|1|52|C|4980
6HCM|1|52|G|4981
6HCM|1|52|A|4982
6HCM|1|52|C|4983

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain P3

uL22