HL_6HCM_113

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GCGGGUCAUAAGCUUGC

Length

17 nucleotides

Bulged bases

6HCM|1|A1|G|1665

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|A1|G|1654
6HCM|1|A1|C|1655
6HCM|1|A1|G|1656
6HCM|1|A1|G|1657
6HCM|1|A1|G|1658
6HCM|1|A1|U|1659
6HCM|1|A1|C|1660
6HCM|1|A1|A|1661
6HCM|1|A1|U|1662
6HCM|1|A1|A|1663
6HCM|1|A1|A|1664
6HCM|1|A1|G|1665
6HCM|1|A1|C|1666
6HCM|1|A1|U|1667
6HCM|1|A1|U|1668
6HCM|1|A1|G|1669
6HCM|1|A1|C|1670

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain R1

Ribosomal protein S16

Chain U1

eS19

Chain V1

uS10

Chain e1

uS14