HL_6HCM_127

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_127 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.2579

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6HCM|1|52|A|2376
6HCM|1|52|C|2377
6HCM|1|52|G|2378
6HCM|1|52|A|2379
6HCM|1|52|G|2380
6HCM|1|52|A|2381
6HCM|1|52|A|2382
6HCM|1|52|C|2383
6HCM|1|52|U|2384

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain P3

uL22

Chain R3

eL19

Chain d3

eL31