HL_6HCM_151

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGAUCAGAUACCG

Length

13 nucleotides

Bulged bases

6HCM|1|A1|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|A1|C|1053
6HCM|1|A1|G|1054
6HCM|1|A1|A|1055
6HCM|1|A1|U|1056
6HCM|1|A1|C|1057
6HCM|1|A1|A|1058
6HCM|1|A1|G|1059
6HCM|1|A1|A|1060
6HCM|1|A1|U|1061
6HCM|1|A1|A|1062
6HCM|1|A1|C|1063
6HCM|1|A1|C|1064
6HCM|1|A1|G|1065

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain 52

Large subunit ribosomal RNA; LSU rRNA

Chain P1

uS11

Chain b1

eS26

Chain w3

mRNA