HL_6HCM_166

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6HCM|1|52|G|2421, 6HCM|1|52|U|2425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_166 not in the Motif Atlas

Homologous match to HL_8CRE_031

Geometric discrepancy: 0.2856

The information below is about HL_8CRE_031

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6HCM|1|52|A|2420
6HCM|1|52|G|2421
6HCM|1|52|C|2422
6HCM|1|52|A|2423
6HCM|1|52|G|2424
6HCM|1|52|U|2425
6HCM|1|52|U|2426

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain P3

uL22

Chain R3

eL19

Chain l3

eL39