HL_6HCQ_008

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_008 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.336

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6HCQ|1|51|U|204
6HCQ|1|51|C|205
6HCQ|1|51|U|206
6HCQ|1|51|G|207
6HCQ|1|51|A|208
6HCQ|1|51|U|209
6HCQ|1|51|C|210
6HCQ|1|51|G|211

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain Y3

Ribosomal protein L26

Chain e3

eL32