6HCQ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6HCQ_007 | 1/51/131:137 | No text annotation | geometric HL_8G9Z_001 HL_75660.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6HCQ_001 | No text annotation | ||
| HL_6HCQ_119 | No text annotation | ||
| HL_6HCQ_002 | tRNA anticodon loop | ||
| HL_6HCQ_003 | T-loop with 2 stacked bulged bases | ||
| HL_6HCQ_120 | No text annotation | ||
| HL_6HCQ_004 | No text annotation | ||
| HL_6HCQ_121 | No text annotation | ||
| HL_6HCQ_005 | No text annotation | ||
| HL_6HCQ_006 | No text annotation | ||
| HL_6HCQ_122 | No text annotation | ||
| HL_6HCQ_008 | T-loop with 2 stacked bulged bases | ||
| HL_6HCQ_009 | No text annotation | ||
| HL_6HCQ_123 | No text annotation | ||
| HL_6HCQ_010 | T-loop with unstacked turn | ||
| HL_6HCQ_011 | No text annotation | ||
| HL_6HCQ_159 | T-loop related | ||
| HL_6HCQ_012 | Pseudoknot geometry | ||
| HL_6HCQ_013 | GNRA | ||
| HL_6HCQ_124 | No text annotation | ||
| HL_6HCQ_014 | No text annotation | ||
| HL_6HCQ_160 | GNRA | ||
| HL_6HCQ_015 | No text annotation | ||
| HL_6HCQ_125 | No text annotation | ||
| HL_6HCQ_126 | No text annotation | ||
| HL_6HCQ_161 | No text annotation | ||
| HL_6HCQ_016 | No text annotation | ||
| HL_6HCQ_017 | No text annotation | ||
| HL_6HCQ_018 | No text annotation | ||
| HL_6HCQ_162 | No text annotation | ||
| HL_6HCQ_019 | No text annotation | ||
| HL_6HCQ_020 | No text annotation | ||
| HL_6HCQ_163 | T-loop with 2 stacked bulged bases | ||
| HL_6HCQ_127 | No text annotation | ||
| HL_6HCQ_021 | No text annotation | ||
| HL_6HCQ_164 | No text annotation | ||
| HL_6HCQ_022 | No text annotation | ||
| HL_6HCQ_023 | No text annotation | ||
| HL_6HCQ_128 | No text annotation | ||
| HL_6HCQ_024 | No text annotation | ||
| HL_6HCQ_165 | No text annotation | ||
| HL_6HCQ_129 | No text annotation | ||
| HL_6HCQ_025 | No text annotation | ||
| HL_6HCQ_026 | No text annotation | ||
| HL_6HCQ_166 | No text annotation | ||
| HL_6HCQ_027 | No text annotation | ||
| HL_6HCQ_028 | Externally structured | ||
| HL_6HCQ_029 | tRNA D-loop | ||
| HL_6HCQ_030 | No text annotation | ||
| HL_6HCQ_130 | No text annotation | ||
| HL_6HCQ_167 | No text annotation | ||
| HL_6HCQ_031 | GNRA | ||
| HL_6HCQ_131 | No text annotation | ||
| HL_6HCQ_032 | No text annotation | ||
| HL_6HCQ_033 | GNRA wlth tandem sheared | ||
| HL_6HCQ_034 | No text annotation | ||
| HL_6HCQ_035 | GNRA | ||
| HL_6HCQ_036 | No text annotation | ||
| HL_6HCQ_168 | T-loop with 2 stacked bulged bases | ||
| HL_6HCQ_037 | Pseudoknot geometry with 3' bulge | ||
| HL_6HCQ_038 | GNRA variation | ||
| HL_6HCQ_039 | No text annotation | ||
| HL_6HCQ_040 | No text annotation | ||
| HL_6HCQ_041 | No text annotation | ||
| HL_6HCQ_042 | GNRA | ||
| HL_6HCQ_132 | tRNA D-loop | ||
| HL_6HCQ_043 | No text annotation | ||
| HL_6HCQ_044 | No text annotation | ||
| HL_6HCQ_045 | No text annotation | ||
| HL_6HCQ_133 | No text annotation | ||
| HL_6HCQ_046 | No text annotation | ||
| HL_6HCQ_047 | GNRA | ||
| HL_6HCQ_134 | No text annotation | ||
| HL_6HCQ_169 | No text annotation | ||
| HL_6HCQ_048 | UNCG | ||
| HL_6HCQ_049 | No text annotation | ||
| HL_6HCQ_170 | No text annotation | ||
| HL_6HCQ_050 | No text annotation | ||
| HL_6HCQ_051 | GNRA | ||
| HL_6HCQ_052 | GNRA with extra cWW | ||
| HL_6HCQ_171 | GNRA | ||
| HL_6HCQ_135 | tRNA D-loop | ||
| HL_6HCQ_053 | No text annotation | ||
| HL_6HCQ_054 | No text annotation | ||
| HL_6HCQ_136 | No text annotation | ||
| HL_6HCQ_055 | No text annotation | ||
| HL_6HCQ_056 | No text annotation | ||
| HL_6HCQ_057 | No text annotation | ||
| HL_6HCQ_137 | No text annotation | ||
| HL_6HCQ_058 | No text annotation | ||
| HL_6HCQ_059 | No text annotation | ||
| HL_6HCQ_060 | No text annotation | ||
| HL_6HCQ_061 | Pseudoknot geometry | ||
| HL_6HCQ_062 | No text annotation | ||
| HL_6HCQ_063 | No text annotation | ||
| HL_6HCQ_138 | No text annotation | ||
| HL_6HCQ_172 | No text annotation | ||
| HL_6HCQ_064 | No text annotation | ||
| HL_6HCQ_139 | No text annotation | ||
| HL_6HCQ_065 | No text annotation | ||
| HL_6HCQ_066 | No text annotation | ||
| HL_6HCQ_067 | No text annotation | ||
| HL_6HCQ_068 | GNRA | ||
| HL_6HCQ_069 | GNRA | ||
| HL_6HCQ_070 | Ribsomal LSU H95 | ||
| HL_6HCQ_071 | No text annotation | ||
| HL_6HCQ_072 | No text annotation | ||
| HL_6HCQ_073 | No text annotation | ||
| HL_6HCQ_074 | No text annotation | ||
| HL_6HCQ_075 | No text annotation | ||
| HL_6HCQ_140 | No text annotation | ||
| HL_6HCQ_076 | No text annotation | ||
| HL_6HCQ_141 | No text annotation | ||
| HL_6HCQ_173 | No text annotation | ||
| HL_6HCQ_077 | GNRA with extra cWW | ||
| HL_6HCQ_078 | Pseudoknot with intercalation | ||
| HL_6HCQ_142 | No text annotation | ||
| HL_6HCQ_079 | No text annotation | ||
| HL_6HCQ_080 | No text annotation | ||
| HL_6HCQ_081 | No text annotation | ||
| HL_6HCQ_143 | No text annotation | ||
| HL_6HCQ_082 | No text annotation | ||
| HL_6HCQ_174 | No text annotation | ||
| HL_6HCQ_144 | No text annotation | ||
| HL_6HCQ_175 | No text annotation | ||
| HL_6HCQ_083 | No text annotation | ||
| HL_6HCQ_145 | No text annotation | ||
| HL_6HCQ_084 | GNRA related | ||
| HL_6HCQ_146 | No text annotation | ||
| HL_6HCQ_085 | No text annotation | ||
| HL_6HCQ_086 | No text annotation | ||
| HL_6HCQ_087 | T-loop with 1 bulged base | ||
| HL_6HCQ_088 | No text annotation | ||
| HL_6HCQ_089 | No text annotation | ||
| HL_6HCQ_176 | No text annotation | ||
| HL_6HCQ_090 | No text annotation | ||
| HL_6HCQ_147 | No text annotation | ||
| HL_6HCQ_091 | No text annotation | ||
| HL_6HCQ_148 | No text annotation | ||
| HL_6HCQ_092 | UNCG | ||
| HL_6HCQ_093 | No text annotation | ||
| HL_6HCQ_094 | GNRA with extra cWW | ||
| HL_6HCQ_177 | No text annotation | ||
| HL_6HCQ_149 | No text annotation | ||
| HL_6HCQ_095 | No text annotation | ||
| HL_6HCQ_150 | No text annotation | ||
| HL_6HCQ_096 | GNRA variation | ||
| HL_6HCQ_097 | No text annotation | ||
| HL_6HCQ_098 | No text annotation | ||
| HL_6HCQ_151 | No text annotation | ||
| HL_6HCQ_099 | No text annotation | ||
| HL_6HCQ_100 | GNRA | ||
| HL_6HCQ_152 | No text annotation | ||
| HL_6HCQ_101 | No text annotation | ||
| HL_6HCQ_102 | No text annotation | ||
| HL_6HCQ_153 | No text annotation | ||
| HL_6HCQ_178 | No text annotation | ||
| HL_6HCQ_103 | GNRA | ||
| HL_6HCQ_104 | GNRA | ||
| HL_6HCQ_105 | No text annotation | ||
| HL_6HCQ_154 | No text annotation | ||
| HL_6HCQ_106 | No text annotation | ||
| HL_6HCQ_107 | T-loop with 1 bulged base | ||
| HL_6HCQ_179 | GNRA | ||
| HL_6HCQ_155 | No text annotation | ||
| HL_6HCQ_108 | No text annotation | ||
| HL_6HCQ_109 | No text annotation | ||
| HL_6HCQ_110 | GNRA | ||
| HL_6HCQ_156 | No text annotation | ||
| HL_6HCQ_111 | GNRA | ||
| HL_6HCQ_112 | No text annotation | ||
| HL_6HCQ_113 | No text annotation | ||
| HL_6HCQ_114 | No text annotation | ||
| HL_6HCQ_115 | GNRA variation | ||
| HL_6HCQ_116 | No text annotation | ||
| HL_6HCQ_157 | No text annotation | ||
| HL_6HCQ_117 | No text annotation | ||
| HL_6HCQ_180 | tRNA anticodon loop | ||
| HL_6HCQ_158 | No text annotation | ||
| HL_6HCQ_118 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6HCQ_308 | 1/51/1074:1084, 1/51/1213:1236 | No text annotation | ||
| IL_6HCQ_233 | 1/51/1914:1944, 1/51/2038:2049 | No text annotation | ||
| IL_6HCQ_064 | 1/51/1926:1944, 1/51/2038:2058 | No text annotation | ||
| IL_6HCQ_122 | 1/51/4756:4766, 1/51/4868:4877 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6HCQ_001 | Isolated cWH basepair | ||
| IL_6HCQ_002 | Isolated cWH basepair | ||
| IL_6HCQ_208 | No text annotation | ||
| IL_6HCQ_003 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6HCQ_004 | Stack outside cWW | ||
| IL_6HCQ_297 | No text annotation | ||
| IL_6HCQ_209 | No text annotation | ||
| IL_6HCQ_005 | No text annotation | ||
| IL_6HCQ_298 | No text annotation | ||
| IL_6HCQ_210 | No text annotation | ||
| IL_6HCQ_006 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_007 | No text annotation | ||
| IL_6HCQ_008 | No text annotation | ||
| IL_6HCQ_009 | Other IL | ||
| IL_6HCQ_010 | No text annotation | ||
| IL_6HCQ_211 | No text annotation | ||
| IL_6HCQ_011 | No text annotation | ||
| IL_6HCQ_212 | Tandem non-canonical cWW pairs | ||
| IL_6HCQ_012 | Single bulged C | ||
| IL_6HCQ_013 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_014 | Minor groove platform | ||
| IL_6HCQ_299 | No text annotation | ||
| IL_6HCQ_213 | No text annotation | ||
| IL_6HCQ_015 | Single bulged A | ||
| IL_6HCQ_016 | No text annotation | ||
| IL_6HCQ_214 | No text annotation | ||
| IL_6HCQ_300 | No text annotation | ||
| IL_6HCQ_017 | Single stack bend | ||
| IL_6HCQ_018 | Single stack bend | ||
| IL_6HCQ_019 | No text annotation | ||
| IL_6HCQ_215 | Partly complementary | ||
| IL_6HCQ_301 | No text annotation | ||
| IL_6HCQ_020 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_216 | Tandem non-canonical cWW pairs | ||
| IL_6HCQ_021 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_217 | No text annotation | ||
| IL_6HCQ_218 | Single stack bend | ||
| IL_6HCQ_302 | Single stack bend | ||
| IL_6HCQ_219 | No text annotation | ||
| IL_6HCQ_022 | Other IL | ||
| IL_6HCQ_220 | No text annotation | ||
| IL_6HCQ_023 | Multiple bulged bases | ||
| IL_6HCQ_024 | Single bulged U | ||
| IL_6HCQ_221 | No text annotation | ||
| IL_6HCQ_025 | No text annotation | ||
| IL_6HCQ_303 | No text annotation | ||
| IL_6HCQ_026 | Single bulged A | ||
| IL_6HCQ_027 | Single bulged G | ||
| IL_6HCQ_028 | No text annotation | ||
| IL_6HCQ_222 | No text annotation | ||
| IL_6HCQ_223 | No text annotation | ||
| IL_6HCQ_304 | No text annotation | ||
| IL_6HCQ_305 | No text annotation | ||
| IL_6HCQ_029 | No text annotation | ||
| IL_6HCQ_030 | No text annotation | ||
| IL_6HCQ_306 | No text annotation | ||
| IL_6HCQ_224 | No text annotation | ||
| IL_6HCQ_031 | No text annotation | ||
| IL_6HCQ_032 | No text annotation | ||
| IL_6HCQ_307 | No text annotation | ||
| IL_6HCQ_033 | Tandem non-canonical cWW pairs | ||
| IL_6HCQ_225 | No text annotation | ||
| IL_6HCQ_034 | No text annotation | ||
| IL_6HCQ_226 | No text annotation | ||
| IL_6HCQ_035 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_309 | No text annotation | ||
| IL_6HCQ_036 | Single stack bend | ||
| IL_6HCQ_037 | No text annotation | ||
| IL_6HCQ_227 | No text annotation | ||
| IL_6HCQ_038 | No text annotation | ||
| IL_6HCQ_039 | Major groove intercalation | ||
| IL_6HCQ_228 | No text annotation | ||
| IL_6HCQ_310 | No text annotation | ||
| IL_6HCQ_040 | No text annotation | ||
| IL_6HCQ_041 | Single bulged A | ||
| IL_6HCQ_042 | No text annotation | ||
| IL_6HCQ_043 | No text annotation | ||
| IL_6HCQ_229 | No text annotation | ||
| IL_6HCQ_044 | Single stack bend | ||
| IL_6HCQ_045 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_046 | tHW-tHW cross-strand stack | ||
| IL_6HCQ_311 | No text annotation | ||
| IL_6HCQ_047 | Single bulged G | ||
| IL_6HCQ_048 | No text annotation | ||
| IL_6HCQ_049 | No text annotation | ||
| IL_6HCQ_050 | Multiple bulged bases | ||
| IL_6HCQ_051 | No text annotation | ||
| IL_6HCQ_052 | No text annotation | ||
| IL_6HCQ_053 | Tandem non-canonical cWW pairs | ||
| IL_6HCQ_230 | Partly complementary | ||
| IL_6HCQ_312 | No text annotation | ||
| IL_6HCQ_054 | No text annotation | ||
| IL_6HCQ_055 | No text annotation | ||
| IL_6HCQ_056 | No text annotation | ||
| IL_6HCQ_231 | No text annotation | ||
| IL_6HCQ_057 | No text annotation | ||
| IL_6HCQ_313 | No text annotation | ||
| IL_6HCQ_058 | No text annotation | ||
| IL_6HCQ_059 | Isolated cWS basepair | ||
| IL_6HCQ_232 | No text annotation | ||
| IL_6HCQ_060 | UAA/GAN with extra cWW | ||
| IL_6HCQ_314 | No text annotation | ||
| IL_6HCQ_061 | Tandem non-canonical cWW pairs | ||
| IL_6HCQ_062 | No text annotation | ||
| IL_6HCQ_063 | No text annotation | ||
| IL_6HCQ_065 | Isolated non-canonical cWW with bulges | ||
| IL_6HCQ_234 | No text annotation | ||
| IL_6HCQ_315 | No text annotation | ||
| IL_6HCQ_235 | No text annotation | ||
| IL_6HCQ_316 | No text annotation | ||
| IL_6HCQ_066 | Major groove platform with extra cWW | ||
| IL_6HCQ_067 | No text annotation | ||
| IL_6HCQ_236 | No text annotation | ||
| IL_6HCQ_068 | Single bulged A | ||
| IL_6HCQ_317 | No text annotation | ||
| IL_6HCQ_237 | No text annotation | ||
| IL_6HCQ_069 | Kink-turn | ||
| IL_6HCQ_070 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_071 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6HCQ_072 | No text annotation | ||
| IL_6HCQ_238 | No text annotation | ||
| IL_6HCQ_318 | C-loop | ||
| IL_6HCQ_073 | UAA/GAN | ||
| IL_6HCQ_239 | No text annotation | ||
| IL_6HCQ_074 | No text annotation | ||
| IL_6HCQ_319 | No text annotation | ||
| IL_6HCQ_240 | Tandem non-canonical cWW pairs | ||
| IL_6HCQ_241 | No text annotation | ||
| IL_6HCQ_075 | Single bulged C | ||
| IL_6HCQ_320 | No text annotation | ||
| IL_6HCQ_242 | No text annotation | ||
| IL_6HCQ_076 | Other IL | ||
| IL_6HCQ_077 | tSH-tHW | ||
| IL_6HCQ_243 | No text annotation | ||
| IL_6HCQ_078 | Single bulged G | ||
| IL_6HCQ_079 | No text annotation | ||
| IL_6HCQ_244 | No text annotation | ||
| IL_6HCQ_080 | No text annotation | ||
| IL_6HCQ_321 | No text annotation | ||
| IL_6HCQ_245 | No text annotation | ||
| IL_6HCQ_081 | No text annotation | ||
| IL_6HCQ_082 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_083 | No text annotation | ||
| IL_6HCQ_084 | Single bulged A | ||
| IL_6HCQ_246 | No text annotation | ||
| IL_6HCQ_085 | Kink-turn related | ||
| IL_6HCQ_086 | No text annotation | ||
| IL_6HCQ_087 | Single stack bend | ||
| IL_6HCQ_088 | No text annotation | ||
| IL_6HCQ_247 | No text annotation | ||
| IL_6HCQ_089 | No text annotation | ||
| IL_6HCQ_248 | Single stack bend | ||
| IL_6HCQ_322 | No text annotation | ||
| IL_6HCQ_249 | No text annotation | ||
| IL_6HCQ_090 | Major groove platform with extra pair | ||
| IL_6HCQ_091 | No text annotation | ||
| IL_6HCQ_092 | No text annotation | ||
| IL_6HCQ_250 | No text annotation | ||
| IL_6HCQ_093 | No text annotation | ||
| IL_6HCQ_323 | No text annotation | ||
| IL_6HCQ_094 | No text annotation | ||
| IL_6HCQ_324 | Single stack bend | ||
| IL_6HCQ_251 | No text annotation | ||
| IL_6HCQ_095 | No text annotation | ||
| IL_6HCQ_252 | No text annotation | ||
| IL_6HCQ_096 | No text annotation | ||
| IL_6HCQ_097 | No text annotation | ||
| IL_6HCQ_253 | No text annotation | ||
| IL_6HCQ_325 | No text annotation | ||
| IL_6HCQ_098 | No text annotation | ||
| IL_6HCQ_099 | Single bulged A | ||
| IL_6HCQ_100 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_254 | No text annotation | ||
| IL_6HCQ_101 | Single stack bend | ||
| IL_6HCQ_102 | Single stack bend | ||
| IL_6HCQ_103 | No text annotation | ||
| IL_6HCQ_104 | No text annotation | ||
| IL_6HCQ_255 | No text annotation | ||
| IL_6HCQ_105 | No text annotation | ||
| IL_6HCQ_106 | Isolated non-canonical cWW with bulges | ||
| IL_6HCQ_107 | Isolated non-canonical cWW with bulges | ||
| IL_6HCQ_108 | Multiple bulged bases | ||
| IL_6HCQ_256 | No text annotation | ||
| IL_6HCQ_257 | No text annotation | ||
| IL_6HCQ_326 | No text annotation | ||
| IL_6HCQ_109 | No text annotation | ||
| IL_6HCQ_110 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_258 | Partly complementary | ||
| IL_6HCQ_327 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_111 | Single bulged A | ||
| IL_6HCQ_112 | Isolated cWH basepair | ||
| IL_6HCQ_113 | Double sheared | ||
| IL_6HCQ_114 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_259 | No text annotation | ||
| IL_6HCQ_328 | No text annotation | ||
| IL_6HCQ_115 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6HCQ_116 | No text annotation | ||
| IL_6HCQ_329 | No text annotation | ||
| IL_6HCQ_117 | UAA/GAN related | ||
| IL_6HCQ_330 | No text annotation | ||
| IL_6HCQ_260 | No text annotation | ||
| IL_6HCQ_118 | No text annotation | ||
| IL_6HCQ_331 | No text annotation | ||
| IL_6HCQ_119 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_261 | No text annotation | ||
| IL_6HCQ_120 | No text annotation | ||
| IL_6HCQ_262 | No text annotation | ||
| IL_6HCQ_121 | No text annotation | ||
| IL_6HCQ_332 | No text annotation | ||
| IL_6HCQ_263 | No text annotation | ||
| IL_6HCQ_123 | Tandem non-canonical cWW pairs | ||
| IL_6HCQ_333 | No text annotation | ||
| IL_6HCQ_264 | No text annotation | ||
| IL_6HCQ_124 | No text annotation | ||
| IL_6HCQ_265 | Tandem non-canonical cWW pairs | ||
| IL_6HCQ_125 | No text annotation | ||
| IL_6HCQ_334 | No text annotation | ||
| IL_6HCQ_266 | No text annotation | ||
| IL_6HCQ_126 | No text annotation | ||
| IL_6HCQ_335 | No text annotation | ||
| IL_6HCQ_267 | No text annotation | ||
| IL_6HCQ_127 | No text annotation | ||
| IL_6HCQ_128 | Single bulged G, near cWW | ||
| IL_6HCQ_268 | Tandem non-canonical cWW pairs | ||
| IL_6HCQ_269 | No text annotation | ||
| IL_6HCQ_270 | No text annotation | ||
| IL_6HCQ_129 | No text annotation | ||
| IL_6HCQ_336 | No text annotation | ||
| IL_6HCQ_130 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_131 | No text annotation | ||
| IL_6HCQ_271 | No text annotation | ||
| IL_6HCQ_337 | No text annotation | ||
| IL_6HCQ_132 | No text annotation | ||
| IL_6HCQ_133 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6HCQ_134 | Other IL | ||
| IL_6HCQ_135 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_272 | Partly complementary | ||
| IL_6HCQ_136 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_137 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_138 | Double sheared | ||
| IL_6HCQ_139 | No text annotation | ||
| IL_6HCQ_140 | No text annotation | ||
| IL_6HCQ_141 | No text annotation | ||
| IL_6HCQ_142 | No text annotation | ||
| IL_6HCQ_273 | No text annotation | ||
| IL_6HCQ_143 | No text annotation | ||
| IL_6HCQ_274 | Single stack bend | ||
| IL_6HCQ_144 | No text annotation | ||
| IL_6HCQ_275 | No text annotation | ||
| IL_6HCQ_145 | No text annotation | ||
| IL_6HCQ_276 | No text annotation | ||
| IL_6HCQ_146 | No text annotation | ||
| IL_6HCQ_338 | No text annotation | ||
| IL_6HCQ_147 | No text annotation | ||
| IL_6HCQ_148 | No text annotation | ||
| IL_6HCQ_149 | No text annotation | ||
| IL_6HCQ_339 | No text annotation | ||
| IL_6HCQ_150 | No text annotation | ||
| IL_6HCQ_277 | No text annotation | ||
| IL_6HCQ_151 | No text annotation | ||
| IL_6HCQ_152 | Isolated cWH basepair | ||
| IL_6HCQ_153 | Isolated near basepair | ||
| IL_6HCQ_340 | Single bulged U | ||
| IL_6HCQ_154 | C-loop with extra cWW pair | ||
| IL_6HCQ_278 | No text annotation | ||
| IL_6HCQ_341 | No text annotation | ||
| IL_6HCQ_279 | No text annotation | ||
| IL_6HCQ_155 | No text annotation | ||
| IL_6HCQ_156 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_280 | No text annotation | ||
| IL_6HCQ_157 | No text annotation | ||
| IL_6HCQ_342 | No text annotation | ||
| IL_6HCQ_158 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_159 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_343 | No text annotation | ||
| IL_6HCQ_281 | No text annotation | ||
| IL_6HCQ_160 | No text annotation | ||
| IL_6HCQ_161 | No text annotation | ||
| IL_6HCQ_162 | Major groove minor groove platform; mini C-loop | ||
| IL_6HCQ_163 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_164 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_165 | No text annotation | ||
| IL_6HCQ_166 | Major groove platform; stack outside cWW | ||
| IL_6HCQ_167 | Tandem non-canonical cWW pairs | ||
| IL_6HCQ_344 | No text annotation | ||
| IL_6HCQ_282 | No text annotation | ||
| IL_6HCQ_168 | No text annotation | ||
| IL_6HCQ_169 | Tandem non-canonical cWW pairs | ||
| IL_6HCQ_345 | No text annotation | ||
| IL_6HCQ_283 | No text annotation | ||
| IL_6HCQ_170 | No text annotation | ||
| IL_6HCQ_284 | No text annotation | ||
| IL_6HCQ_346 | No text annotation | ||
| IL_6HCQ_171 | Kink-turn | ||
| IL_6HCQ_172 | No text annotation | ||
| IL_6HCQ_173 | tSH-tHW-tHS | ||
| IL_6HCQ_285 | No text annotation | ||
| IL_6HCQ_347 | No text annotation | ||
| IL_6HCQ_174 | No text annotation | ||
| IL_6HCQ_286 | No text annotation | ||
| IL_6HCQ_175 | No text annotation | ||
| IL_6HCQ_348 | Minor groove platform | ||
| IL_6HCQ_176 | No text annotation | ||
| IL_6HCQ_287 | No text annotation | ||
| IL_6HCQ_349 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6HCQ_177 | No text annotation | ||
| IL_6HCQ_178 | No text annotation | ||
| IL_6HCQ_179 | C-loop | ||
| IL_6HCQ_180 | No text annotation | ||
| IL_6HCQ_288 | No text annotation | ||
| IL_6HCQ_181 | Minor groove platform | ||
| IL_6HCQ_182 | No text annotation | ||
| IL_6HCQ_183 | No text annotation | ||
| IL_6HCQ_184 | Single bulged U | ||
| IL_6HCQ_185 | No text annotation | ||
| IL_6HCQ_186 | No text annotation | ||
| IL_6HCQ_187 | No text annotation | ||
| IL_6HCQ_188 | Minor groove platform | ||
| IL_6HCQ_189 | Tandem non-canonical cWW pairs | ||
| IL_6HCQ_190 | No text annotation | ||
| IL_6HCQ_191 | No text annotation | ||
| IL_6HCQ_192 | No text annotation | ||
| IL_6HCQ_289 | No text annotation | ||
| IL_6HCQ_193 | 180 degree turn | ||
| IL_6HCQ_194 | Isolated non-canonical cWW pair | ||
| IL_6HCQ_290 | Tandem non-canonical cWW pairs | ||
| IL_6HCQ_195 | No text annotation | ||
| IL_6HCQ_196 | No text annotation | ||
| IL_6HCQ_350 | No text annotation | ||
| IL_6HCQ_197 | No text annotation | ||
| IL_6HCQ_291 | No text annotation | ||
| IL_6HCQ_198 | No text annotation | ||
| IL_6HCQ_292 | No text annotation | ||
| IL_6HCQ_199 | No text annotation | ||
| IL_6HCQ_293 | No text annotation | ||
| IL_6HCQ_200 | No text annotation | ||
| IL_6HCQ_351 | No text annotation | ||
| IL_6HCQ_201 | Double sheared | ||
| IL_6HCQ_202 | No text annotation | ||
| IL_6HCQ_352 | Partly complementary | ||
| IL_6HCQ_294 | No text annotation | ||
| IL_6HCQ_203 | Triple sheared | ||
| IL_6HCQ_204 | No text annotation | ||
| IL_6HCQ_295 | No text annotation | ||
| IL_6HCQ_205 | Other IL | ||
| IL_6HCQ_206 | Single stack bend | ||
| IL_6HCQ_296 | No text annotation | ||
| IL_6HCQ_207 | No text annotation | ||
| IL_6HCQ_353 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J8_6HCQ_003 | 1/51/3900:3923, 1/51/4188:4191, 1/51/4204:4230, 1/51/4331:4342, 1/51/4370:4400, 1/51/4444:4455, 1/51/4525:4534, 1/51/4552:4561 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6HCQ_001 | No text annotation | ||
| J3_6HCQ_042 | No text annotation | ||
| J3_6HCQ_025 | No text annotation | ||
| J3_6HCQ_026 | No text annotation | ||
| J3_6HCQ_002 | No text annotation | ||
| J3_6HCQ_027 | No text annotation | ||
| J3_6HCQ_043 | No text annotation | ||
| J3_6HCQ_003 | No text annotation | ||
| J3_6HCQ_028 | No text annotation | ||
| J3_6HCQ_044 | No text annotation | ||
| J3_6HCQ_004 | No text annotation | ||
| J3_6HCQ_029 | No text annotation | ||
| J3_6HCQ_005 | No text annotation | ||
| J3_6HCQ_006 | No text annotation | ||
| J3_6HCQ_030 | No text annotation | ||
| J3_6HCQ_045 | No text annotation | ||
| J3_6HCQ_031 | No text annotation | ||
| J3_6HCQ_032 | No text annotation | ||
| J3_6HCQ_046 | No text annotation | ||
| J3_6HCQ_007 | No text annotation | ||
| J3_6HCQ_008 | No text annotation | ||
| J3_6HCQ_009 | Kink-turn 3-way junction | ||
| J3_6HCQ_033 | No text annotation | ||
| J3_6HCQ_034 | No text annotation | ||
| J3_6HCQ_035 | No text annotation | ||
| J3_6HCQ_047 | No text annotation | ||
| J3_6HCQ_010 | No text annotation | ||
| J3_6HCQ_011 | No text annotation | ||
| J3_6HCQ_048 | No text annotation | ||
| J3_6HCQ_036 | No text annotation | ||
| J3_6HCQ_037 | No text annotation | ||
| J3_6HCQ_049 | No text annotation | ||
| J3_6HCQ_012 | No text annotation | ||
| J3_6HCQ_013 | No text annotation | ||
| J3_6HCQ_014 | No text annotation | ||
| J3_6HCQ_038 | No text annotation | ||
| J3_6HCQ_015 | No text annotation | ||
| J3_6HCQ_050 | No text annotation | ||
| J3_6HCQ_016 | No text annotation | ||
| J3_6HCQ_017 | No text annotation | ||
| J3_6HCQ_051 | No text annotation | ||
| J3_6HCQ_018 | No text annotation | ||
| J3_6HCQ_039 | No text annotation | ||
| J3_6HCQ_019 | No text annotation | ||
| J3_6HCQ_052 | No text annotation | ||
| J3_6HCQ_053 | No text annotation | ||
| J3_6HCQ_040 | No text annotation | ||
| J3_6HCQ_020 | No text annotation | ||
| J3_6HCQ_021 | No text annotation | ||
| J3_6HCQ_041 | No text annotation | ||
| J3_6HCQ_022 | No text annotation | ||
| J3_6HCQ_023 | No text annotation | ||
| J3_6HCQ_024 | No text annotation | ||
| J4_6HCQ_001 | tRNA junction | ||
| J4_6HCQ_012 | No text annotation | ||
| J4_6HCQ_002 | No text annotation | ||
| J4_6HCQ_003 | No text annotation | ||
| J4_6HCQ_013 | No text annotation | ||
| J4_6HCQ_014 | No text annotation | ||
| J4_6HCQ_004 | No text annotation | ||
| J4_6HCQ_015 | No text annotation | ||
| J4_6HCQ_005 | No text annotation | ||
| J4_6HCQ_006 | No text annotation | ||
| J4_6HCQ_016 | No text annotation | ||
| J4_6HCQ_017 | No text annotation | ||
| J4_6HCQ_007 | No text annotation | ||
| J4_6HCQ_018 | No text annotation | ||
| J4_6HCQ_008 | No text annotation | ||
| J4_6HCQ_009 | No text annotation | ||
| J4_6HCQ_019 | No text annotation | ||
| J4_6HCQ_020 | No text annotation | ||
| J4_6HCQ_010 | No text annotation | ||
| J4_6HCQ_011 | No text annotation | ||
| J5_6HCQ_001 | No text annotation | ||
| J5_6HCQ_003 | No text annotation | ||
| J5_6HCQ_004 | No text annotation | ||
| J5_6HCQ_002 | No text annotation | ||
| J6_6HCQ_002 | No text annotation | ||
| J6_6HCQ_001 | No text annotation | ||
| J6_6HCQ_003 | No text annotation | ||
| J7_6HCQ_001 | No text annotation | ||
| J7_6HCQ_003 | No text annotation | ||
| J7_6HCQ_002 | No text annotation | ||
| J8_6HCQ_001 | No text annotation | ||
| J8_6HCQ_002 | No text annotation | ||
| J8_6HCQ_004 | No text annotation | ||
| J9_6HCQ_001 | No text annotation | ||
| J9_6HCQ_002 | No text annotation |
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