HL_6HCQ_020

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUCUUGAAACAC

Length

12 nucleotides

Bulged bases

6HCQ|1|51|C|1325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_020 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3917

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6HCQ|1|51|G|1316
6HCQ|1|51|U|1317
6HCQ|1|51|C|1318
6HCQ|1|51|U|1319
6HCQ|1|51|U|1320
6HCQ|1|51|G|1321
6HCQ|1|51|A|1322
6HCQ|1|51|A|1323
6HCQ|1|51|A|1324
6HCQ|1|51|C|1325
6HCQ|1|51|A|1326
6HCQ|1|51|C|1327

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain a3

uL15

Chain e3

eL32