HL_6HCQ_029

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGCCGAAACGAUC

Length

13 nucleotides

Bulged bases

6HCQ|1|51|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_029 not in the Motif Atlas

Geometric match to HL_7UQ6_001

Geometric discrepancy: 0.2521

The information below is about HL_7UQ6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6HCQ|1|51|G|1760
6HCQ|1|51|G|1761
6HCQ|1|51|C|1762
6HCQ|1|51|C|1763
6HCQ|1|51|G|1764
6HCQ|1|51|A|1765
6HCQ|1|51|A|1766
6HCQ|1|51|A|1767
6HCQ|1|51|C|1768
6HCQ|1|51|G|1769
6HCQ|1|51|A|1770
6HCQ|1|51|U|1771
6HCQ|1|51|C|1772

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain Q2

uS19