HL_6HCQ_034

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG

Length

40 nucleotides

Bulged bases

6HCQ|1|51|C|2094, 6HCQ|1|51|G|2100, 6HCQ|1|51|A|2101, 6HCQ|1|51|G|2112, 6HCQ|1|51|G|2113, 6HCQ|1|51|U|2267, 6HCQ|1|51|C|2269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|51|C|2087
6HCQ|1|51|A|2088
6HCQ|1|51|G|2089
6HCQ|1|51|U|2090
6HCQ|1|51|C|2091
6HCQ|1|51|G|2092
6HCQ|1|51|G|2093
6HCQ|1|51|C|2094
6HCQ|1|51|A|2095
6HCQ|1|51|G|2096
6HCQ|1|51|A|2097
6HCQ|1|51|G|2098
6HCQ|1|51|C|2099
6HCQ|1|51|G|2100
6HCQ|1|51|A|2101
6HCQ|1|51|G|2102
6HCQ|1|51|A|2103
6HCQ|1|51|A|2104
6HCQ|1|51|A|2105
6HCQ|1|51|G|2106
6HCQ|1|51|A|2107
6HCQ|1|51|G|2108
6HCQ|1|51|A|2109
6HCQ|1|51|G|2110
6HCQ|1|51|U|2111
6HCQ|1|51|G|2112
6HCQ|1|51|G|2113
6HCQ|1|51|C|2258
6HCQ|1|51|G|2259
6HCQ|1|51|C|2260
6HCQ|1|51|G|2261
6HCQ|1|51|G|2262
6HCQ|1|51|A|2263
6HCQ|1|51|C|2264
6HCQ|1|51|G|2265
6HCQ|1|51|C|2266
6HCQ|1|51|U|2267
6HCQ|1|51|A|2268
6HCQ|1|51|C|2269
6HCQ|1|51|G|2270

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain E3

60S ribosomal protein L6

Chain F3

uL30

Chain Q3

eL18

Chain b3

eL29

Chain e3

eL32

Chain r3

eL28