HL_6HCQ_064

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UUUGGGUUUUA

Length

11 nucleotides

Bulged bases

6HCQ|1|51|U|4354

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_064 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6HCQ|1|51|U|4352
6HCQ|1|51|U|4353
6HCQ|1|51|U|4354
6HCQ|1|51|G|4355
6HCQ|1|51|G|4356
6HCQ|1|51|G|4357
6HCQ|1|51|U|4358
6HCQ|1|51|U|4359
6HCQ|1|51|U|4360
6HCQ|1|51|U|4361
6HCQ|1|51|A|4362

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain a3

uL15

Chain i3

60S ribosomal protein L36

Chain o3

eL42